Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1016.Seq
         (399 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK098423-1|BAC05305.1|  485|Homo sapiens protein ( Homo sapiens ...    32   0.81 
AK055979-1|BAB71063.1|  710|Homo sapiens protein ( Homo sapiens ...    30   3.3  
AB037780-1|BAA92597.1|  517|Homo sapiens KIAA1359 protein protein.     30   3.3  
AF386649-1|AAL26987.1| 1362|Homo sapiens bromodomain-containing ...    29   4.3  
L02547-1|AAA35691.1|  431|Homo sapiens cleavage stimulation fact...    29   5.7  
BT007138-1|AAP35802.1|  431|Homo sapiens cleavage stimulation fa...    29   5.7  
BC007425-1|AAH07425.1|  431|Homo sapiens cleavage stimulation fa...    29   5.7  
BC001011-1|AAH01011.1|  431|Homo sapiens cleavage stimulation fa...    29   5.7  
AL121914-12|CAI19328.1|  431|Homo sapiens cleavage stimulation f...    29   5.7  
AL121914-11|CAC12718.2|  345|Homo sapiens cleavage stimulation f...    29   5.7  
AK098749-1|BAC05403.1|  141|Homo sapiens protein ( Homo sapiens ...    29   5.7  
BC029267-1|AAH29267.1|  555|Homo sapiens MUC20 protein protein.        29   7.5  
AB098733-1|BAD06720.1|  560|Homo sapiens transmembrane mucin MUC...    29   7.5  

>AK098423-1|BAC05305.1|  485|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25557 fis, clone JTH02756. ).
          Length = 485

 Score = 31.9 bits (69), Expect = 0.81
 Identities = 20/63 (31%), Positives = 28/63 (44%)
 Frame = +3

Query: 6   VAALMDTVPTVVMEVYHPPAVPVTLIQTQTARDPVHPVVAALMDTVPTVVMEVYHPPAVP 185
           V  ++ T+PT++M     P V VT+IQT  A        A     VP+ V     P  + 
Sbjct: 385 VMLILRTMPTLMMRTEDRPKVAVTMIQTAAAMGVASGAGATAAAPVPSPVAASTRPRRMA 444

Query: 186 VTL 194
           V L
Sbjct: 445 VKL 447


>AK055979-1|BAB71063.1|  710|Homo sapiens protein ( Homo sapiens
           cDNA FLJ31417 fis, clone NT2NE2000327, weakly similar to
           GLUCOAMYLASE S1/S2 PRECURSOR (EC 3.2.1.3). ).
          Length = 710

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
 Frame = +3

Query: 30  PTVVMEVYHPPAVPVTLIQTQTARDPVHPVVAA-LMDTVPTVVMEVYHPPAVPVTLMQAQ 206
           P V      PPAV  T+  T+ A+ PV    AA   D+     + + HPP+  +++ +  
Sbjct: 251 PPVTTSNAIPPAVVATVSATR-AQSPVITTTAAHATDSALRPTLSIQHPPSAAISIQRPA 309

Query: 207 TLQD-------PVHPAV 236
             +D       P HPA+
Sbjct: 310 QSRDVTTRITLPSHPAL 326


>AB037780-1|BAA92597.1|  517|Homo sapiens KIAA1359 protein protein.
          Length = 517

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 13/61 (21%), Positives = 24/61 (39%)
 Frame = +3

Query: 54  HPPAVPVTLIQTQTARDPVHPVVAALMDTVPTVVMEVYHPPAVPVTLMQAQTLQDPVHPA 233
           HP   P    ++  + D +HPV+     +  +   +  HP   P    ++    D  HP 
Sbjct: 193 HPVITPSRASESSASSDGLHPVITPSRASESSASSDGPHPVITPSRASESSASSDGPHPV 252

Query: 234 V 236
           +
Sbjct: 253 I 253



 Score = 29.5 bits (63), Expect = 4.3
 Identities = 13/61 (21%), Positives = 23/61 (37%)
 Frame = +3

Query: 54  HPPAVPVTLIQTQTARDPVHPVVAALMDTVPTVVMEVYHPPAVPVTLMQAQTLQDPVHPA 233
           HP   P    ++  + D  HPV+     +  +   +  HP   P    ++    D  HP 
Sbjct: 174 HPVITPSRASESSASSDGPHPVITPSRASESSASSDGLHPVITPSRASESSASSDGPHPV 233

Query: 234 V 236
           +
Sbjct: 234 I 234



 Score = 28.7 bits (61), Expect = 7.5
 Identities = 13/61 (21%), Positives = 23/61 (37%)
 Frame = +3

Query: 54  HPPAVPVTLIQTQTARDPVHPVVAALMDTVPTVVMEVYHPPAVPVTLMQAQTLQDPVHPA 233
           HP   P    ++  + D  HPV+     +  +   +  HP   P    ++    D  HP 
Sbjct: 212 HPVITPSRASESSASSDGPHPVITPSRASESSASSDGPHPVITPSRASESSASSDGPHPV 271

Query: 234 V 236
           +
Sbjct: 272 I 272


>AF386649-1|AAL26987.1| 1362|Homo sapiens bromodomain-containing 4
            protein.
          Length = 1362

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 20/50 (40%), Positives = 23/50 (46%)
 Frame = +3

Query: 57   PPAVPVTLIQTQTARDPVHPVVAALMDTVPTVVMEVYHPPAVPVTLMQAQ 206
            PPAV   L QT     P        M   P V++E   PPA P+T MQ Q
Sbjct: 887  PPAVSPALTQTPLLPQPP-------MAQPPQVLLEDEEPPAPPLTSMQMQ 929



 Score = 29.1 bits (62), Expect = 5.7
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
 Frame = +3

Query: 30   PTVVMEVYHPPAVPVTLIQTQTARDPVHPVVAALMDTVPTVVMEVYHPPAVPV---TLMQ 200
            P V++E   PPA P+T +Q Q     +  V       +P+V ++   PP +P      +Q
Sbjct: 909  PQVLLEDEEPPAPPLTSMQMQLYLQQLQKVQPP-TPLLPSVKVQSQPPPPLPPPPHPSVQ 967

Query: 201  AQTLQDPVHP 230
             Q  Q P  P
Sbjct: 968  QQLQQQPPPP 977


>L02547-1|AAA35691.1|  431|Homo sapiens cleavage stimulation factor
           protein.
          Length = 431

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +3

Query: 63  AVPVTLIQTQTARDPV--HPVVAALMDTVPTVVMEVYHP 173
           A+P+ ++  +TA+  +  HPV+  L D V  V    +HP
Sbjct: 145 AMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLAFHP 183


>BT007138-1|AAP35802.1|  431|Homo sapiens cleavage stimulation
           factor, 3' pre-RNA, subunit 1, 50kDa protein.
          Length = 431

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +3

Query: 63  AVPVTLIQTQTARDPV--HPVVAALMDTVPTVVMEVYHP 173
           A+P+ ++  +TA+  +  HPV+  L D V  V    +HP
Sbjct: 145 AMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLAFHP 183


>BC007425-1|AAH07425.1|  431|Homo sapiens cleavage stimulation
           factor, 3' pre-RNA, subunit 1, 50kDa protein.
          Length = 431

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +3

Query: 63  AVPVTLIQTQTARDPV--HPVVAALMDTVPTVVMEVYHP 173
           A+P+ ++  +TA+  +  HPV+  L D V  V    +HP
Sbjct: 145 AMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLAFHP 183


>BC001011-1|AAH01011.1|  431|Homo sapiens cleavage stimulation
           factor, 3' pre-RNA, subunit 1, 50kDa protein.
          Length = 431

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +3

Query: 63  AVPVTLIQTQTARDPV--HPVVAALMDTVPTVVMEVYHP 173
           A+P+ ++  +TA+  +  HPV+  L D V  V    +HP
Sbjct: 145 AMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLAFHP 183


>AL121914-12|CAI19328.1|  431|Homo sapiens cleavage stimulation
           factor, 3' pre-RNA, subunit 1, 50kDa protein.
          Length = 431

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +3

Query: 63  AVPVTLIQTQTARDPV--HPVVAALMDTVPTVVMEVYHP 173
           A+P+ ++  +TA+  +  HPV+  L D V  V    +HP
Sbjct: 145 AMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLAFHP 183


>AL121914-11|CAC12718.2|  345|Homo sapiens cleavage stimulation
           factor, 3' pre-RNA, subunit 1, 50kDa protein.
          Length = 345

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +3

Query: 63  AVPVTLIQTQTARDPV--HPVVAALMDTVPTVVMEVYHP 173
           A+P+ ++  +TA+  +  HPV+  L D V  V    +HP
Sbjct: 145 AMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLAFHP 183


>AK098749-1|BAC05403.1|  141|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25883 fis, clone CBR02735. ).
          Length = 141

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = -2

Query: 161 FHHDCWNCIHKCCYHRMYWIPRCL--SLNQCYW 69
           +H  C    HK  +HR+ W+  CL    +Q YW
Sbjct: 54  YHGVCRELAHKETWHRLSWLVACLWVHYDQGYW 86


>BC029267-1|AAH29267.1|  555|Homo sapiens MUC20 protein protein.
          Length = 555

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 13/61 (21%), Positives = 23/61 (37%)
 Frame = +3

Query: 54  HPPAVPVTLIQTQTARDPVHPVVAALMDTVPTVVMEVYHPPAVPVTLMQAQTLQDPVHPA 233
           HP   P    ++  + D  HPV+     +  +   +  HP   P    ++    D  HP 
Sbjct: 184 HPVITPSRASESSASSDGPHPVITPSRASESSASSDGPHPVITPSRASESSASSDGPHPV 243

Query: 234 V 236
           +
Sbjct: 244 I 244


>AB098733-1|BAD06720.1|  560|Homo sapiens transmembrane mucin MUC20S
           protein.
          Length = 560

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 13/61 (21%), Positives = 23/61 (37%)
 Frame = +3

Query: 54  HPPAVPVTLIQTQTARDPVHPVVAALMDTVPTVVMEVYHPPAVPVTLMQAQTLQDPVHPA 233
           HP   P    ++  + D  HPV+     +  +   +  HP   P    ++    D  HP 
Sbjct: 149 HPVITPSRASESSASSDGPHPVITPSRASESSASSDGPHPVITPSRASESSASSDGPHPV 208

Query: 234 V 236
           +
Sbjct: 209 I 209



 Score = 28.7 bits (61), Expect = 7.5
 Identities = 13/61 (21%), Positives = 23/61 (37%)
 Frame = +3

Query: 54  HPPAVPVTLIQTQTARDPVHPVVAALMDTVPTVVMEVYHPPAVPVTLMQAQTLQDPVHPA 233
           HP   P    ++  + D  HPV+     +  +   +  HP   P    ++    D  HP 
Sbjct: 168 HPVITPSRASESSASSDGPHPVITPSRASESSASSDGPHPVITPSRASESSASSDGPHPV 227

Query: 234 V 236
           +
Sbjct: 228 I 228



 Score = 28.7 bits (61), Expect = 7.5
 Identities = 13/61 (21%), Positives = 23/61 (37%)
 Frame = +3

Query: 54  HPPAVPVTLIQTQTARDPVHPVVAALMDTVPTVVMEVYHPPAVPVTLMQAQTLQDPVHPA 233
           HP   P    ++  + D  HPV+     +  +   +  HP   P    ++    D  HP 
Sbjct: 187 HPVITPSRASESSASSDGPHPVITPSRASESSASSDGPHPVITPSRASESSASSDGPHPV 246

Query: 234 V 236
           +
Sbjct: 247 I 247


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,709,094
Number of Sequences: 237096
Number of extensions: 1092481
Number of successful extensions: 3195
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3181
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2870859500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)