Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1016.Seq
         (399 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64840-6|AAB04964.1|  574|Caenorhabditis elegans Hypothetical pr...    32   0.17 
U53141-5|AAA96107.1|  574|Caenorhabditis elegans Hypothetical pr...    32   0.17 
AC024785-3|AAF60597.2|  456|Caenorhabditis elegans Hypothetical ...    31   0.40 
AL032626-23|CAE17974.1|   88|Caenorhabditis elegans Hypothetical...    29   1.6  
Z82264-1|CAB05159.1| 1566|Caenorhabditis elegans Hypothetical pr...    27   3.7  
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr...    27   3.7  
U00066-7|AAY86272.1|   80|Caenorhabditis elegans Hypothetical pr...    27   3.7  
Z66497-4|CAA91284.1|  401|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z82083-3|CAB04971.1|  756|Caenorhabditis elegans Hypothetical pr...    26   8.7  
Z81585-4|CAB04687.1|  345|Caenorhabditis elegans Hypothetical pr...    26   8.7  
Z22179-5|CAA80162.2|  786|Caenorhabditis elegans Hypothetical pr...    26   8.7  

>U64840-6|AAB04964.1|  574|Caenorhabditis elegans Hypothetical
           protein ZC317.7 protein.
          Length = 574

 Score = 31.9 bits (69), Expect = 0.17
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 105 PVHPVVAALMDTVPTVVMEVYHP-PAVPVTLMQAQTLQDPV 224
           P+HP +AA+  T    +M V HP P +P+    +Q+ Q P+
Sbjct: 203 PMHPQMAAMAATFNPGLMVVSHPVPVIPIPSNSSQSSQPPM 243


>U53141-5|AAA96107.1|  574|Caenorhabditis elegans Hypothetical
           protein C14C11.2 protein.
          Length = 574

 Score = 31.9 bits (69), Expect = 0.17
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 105 PVHPVVAALMDTVPTVVMEVYHP-PAVPVTLMQAQTLQDPV 224
           P+HP +AA+  T    +M V HP P +P+    +Q+ Q P+
Sbjct: 203 PMHPQMAAMAATFNPGLMVVSHPVPVIPIPSNSSQSSQPPM 243


>AC024785-3|AAF60597.2|  456|Caenorhabditis elegans Hypothetical
           protein Y46C8AL.2 protein.
          Length = 456

 Score = 30.7 bits (66), Expect = 0.40
 Identities = 17/62 (27%), Positives = 21/62 (33%)
 Frame = +3

Query: 24  TVPTVVMEVYHPPAVPVTLIQTQTARDPVHPVVAALMDTVPTVVMEVYHPPAVPVTLMQA 203
           T PT +      P  P T+  T T   P  P       T PT +      P  P T+   
Sbjct: 251 TTPTTMKSTPTTPTTPTTMKSTPTT--PTTPTTMKSTPTTPTTMKSTPTTPTTPTTMKST 308

Query: 204 QT 209
            T
Sbjct: 309 PT 310



 Score = 30.7 bits (66), Expect = 0.40
 Identities = 17/62 (27%), Positives = 21/62 (33%)
 Frame = +3

Query: 24  TVPTVVMEVYHPPAVPVTLIQTQTARDPVHPVVAALMDTVPTVVMEVYHPPAVPVTLMQA 203
           T PT +      P  P T+  T T   P  P       T PT +      P  P T+   
Sbjct: 365 TTPTTMKSTPTTPTTPTTMKSTPTT--PTTPTTMKSTPTTPTTMKSTPTTPTTPTTMKST 422

Query: 204 QT 209
            T
Sbjct: 423 PT 424


>AL032626-23|CAE17974.1|   88|Caenorhabditis elegans Hypothetical
           protein Y37D8A.26 protein.
          Length = 88

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 203 CLHQCYWNCRWMIHFHHDCWNC 138
           C   C+W CR  +  HH C NC
Sbjct: 58  CFIVCFW-CRCFMDVHHRCPNC 78



 Score = 27.1 bits (57), Expect = 5.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 77  CYWNCRWMIHFHHDCWNC 24
           C+W CR  +  HH C NC
Sbjct: 62  CFW-CRCFMDVHHRCPNC 78


>Z82264-1|CAB05159.1| 1566|Caenorhabditis elegans Hypothetical
           protein C49C3.4 protein.
          Length = 1566

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -3

Query: 265 DCRNVSISAATAGCTG 218
           DC N++I+ A+ GCTG
Sbjct: 351 DCANLNITTASGGCTG 366


>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical protein
            F40H6.5 protein.
          Length = 1288

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 14/46 (30%), Positives = 18/46 (39%)
 Frame = +3

Query: 3    VVAALMDTVPTVVMEVYHPPAVPVTLIQTQTARDPVHPVVAALMDT 140
            ++A    T+ TV M    PP  P T   T T   P     + L  T
Sbjct: 1134 MIAYRESTIDTVSMACVRPPTTPTTTTSTTTTTTPKLTTTSTLPST 1179


>U00066-7|AAY86272.1|   80|Caenorhabditis elegans Hypothetical
           protein R12B2.8 protein.
          Length = 80

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 290 PVDDTLPSRLSECIHKCCYRRMYWI 216
           P  DT  S  + C ++CCYR  YW+
Sbjct: 33  PELDTFFSFGTCCDNECCYRLRYWV 57


>Z66497-4|CAA91284.1|  401|Caenorhabditis elegans Hypothetical
           protein K08F8.2 protein.
          Length = 401

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
 Frame = +3

Query: 69  PVTLIQTQTARD-----PVHPVVAALMDTVPTVVMEVYHPPAVPVTLMQAQTLQDPVH 227
           P +LI  Q A++     P+  + A+ M TVP +    + P  + +  +Q  T+Q PV+
Sbjct: 114 PTSLIIPQVAKNLFPAGPIASLQASSMLTVPLLQAASHIPSMLQLCQLQPTTIQSPVY 171


>Z82083-3|CAB04971.1|  756|Caenorhabditis elegans Hypothetical
           protein ZK1010.5 protein.
          Length = 756

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
 Frame = +3

Query: 33  TVVMEVYHPPAVPVTLIQTQTARDPVHPVVAALMDTVPTVVM----EVYHPPAVPVTLMQ 200
           T V +V  PP  PV +    TA+DP       ++ T P VV+        P +   T + 
Sbjct: 509 TTVAQVM-PPNPPVVISGPATAKDPSTTTSDPVVQTNPPVVIVDPATSEEPLSTASTALP 567

Query: 201 AQTLQDPVHPA 233
            +T   P  PA
Sbjct: 568 DETTDAPEEPA 578


>Z81585-4|CAB04687.1|  345|Caenorhabditis elegans Hypothetical
           protein T05E12.4 protein.
          Length = 345

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/39 (25%), Positives = 17/39 (43%)
 Frame = -2

Query: 119 HRMYWIPRCLSLNQCYWNCRWMIHFHHDCWNCIHKCCYH 3
           +R+ W+P  L  N       W  +   DC++C+     H
Sbjct: 165 YRIKWLPSILFYNNSKSKPEWQHYVLVDCFSCVTSLQIH 203


>Z22179-5|CAA80162.2|  786|Caenorhabditis elegans Hypothetical
           protein F58A4.5 protein.
          Length = 786

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
 Frame = +3

Query: 33  TVVMEVYHPPAVPVTLIQTQTARDPVHPVVAALMD---TVPTVVMEVYHPP 176
           T ++    P A+P+ ++  Q+ +DP  P      +   T P +  + Y  P
Sbjct: 523 TTIITTVKPNALPIAIVAKQSEKDPACPAEWTQFNTNATAPALCFKRYEKP 573


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,043,162
Number of Sequences: 27780
Number of extensions: 169046
Number of successful extensions: 642
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)