Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV1016.Seq
(399 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY263366-1|AAO92605.1| 139|Apis mellifera octopamine receptor p... 28 0.045
AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor p... 28 0.045
DQ435337-1|ABD92652.1| 135|Apis mellifera OBP20 protein. 21 6.9
DQ435336-1|ABD92651.1| 135|Apis mellifera OBP19 protein. 21 6.9
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 21 6.9
AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellif... 21 6.9
AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor ... 21 6.9
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 20 9.1
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 20 9.1
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 20 9.1
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 20 9.1
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 20 9.1
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 20 9.1
>AY263366-1|AAO92605.1| 139|Apis mellifera octopamine receptor
protein.
Length = 139
Score = 27.9 bits (59), Expect = 0.045
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -2
Query: 149 CWNCIHKCCYHRMYWIPRCLS-LNQCYW 69
C NCIH + ++W+ C S +N C +
Sbjct: 35 CRNCIHPTVFSVLFWLGYCNSAINPCIY 62
>AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor
protein.
Length = 587
Score = 27.9 bits (59), Expect = 0.045
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -2
Query: 149 CWNCIHKCCYHRMYWIPRCLS-LNQCYW 69
C NCIH + ++W+ C S +N C +
Sbjct: 483 CRNCIHPTVFSVLFWLGYCNSAINPCIY 510
>DQ435337-1|ABD92652.1| 135|Apis mellifera OBP20 protein.
Length = 135
Score = 20.6 bits (41), Expect = 6.9
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -2
Query: 287 VDDTLPSRLSECIHK 243
V+D P R +ECI K
Sbjct: 54 VEDEKPQRYNECILK 68
>DQ435336-1|ABD92651.1| 135|Apis mellifera OBP19 protein.
Length = 135
Score = 20.6 bits (41), Expect = 6.9
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -2
Query: 287 VDDTLPSRLSECIHK 243
V+D P R +ECI K
Sbjct: 54 VEDEKPQRYNECILK 68
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 20.6 bits (41), Expect = 6.9
Identities = 11/38 (28%), Positives = 12/38 (31%)
Frame = -2
Query: 179 CRWMIHFHHDCWNCIHKCCYHRMYWIPRCLSLNQCYWN 66
CR+ H C C C M C N WN
Sbjct: 737 CRYEAHCFALCHCCDFDACDCEMTCPAGCKCYNDRTWN 774
>AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellifera
ORF for hypotheticalprotein. ).
Length = 998
Score = 20.6 bits (41), Expect = 6.9
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = -2
Query: 278 TLPSRLSECIHKCCYRRMYWIL 213
TLP RLS C+ C +++
Sbjct: 146 TLPLRLSFCVVLACSTATVYVM 167
>AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor A
isoform protein.
Length = 567
Score = 20.6 bits (41), Expect = 6.9
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +3
Query: 171 PPAVPVTLMQAQTLQDPVHPAVAA 242
PP+VPV A T + P +AA
Sbjct: 54 PPSVPVGSAVAGTAGGALFPGMAA 77
Score = 20.2 bits (40), Expect = 9.1
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +2
Query: 284 PPAVPVTLMQAQTWQDPVHPAVAALMDXASDCGD 385
PP+VPV A T + P +AA A+ D
Sbjct: 54 PPSVPVGSAVAGTAGGALFPGMAAAGKGAARSDD 87
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 20.2 bits (40), Expect = 9.1
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = -2
Query: 290 PVDDTLPSRLSECIHKCCYRRMYWIL 213
P D SR+ + C+ MYWI+
Sbjct: 401 PSDIDKYSRIVFPVCFVCFNLMYWII 426
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 20.2 bits (40), Expect = 9.1
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = -2
Query: 290 PVDDTLPSRLSECIHKCCYRRMYWIL 213
P D SR+ + C+ MYWI+
Sbjct: 401 PSDIDKYSRIVFPVCFVCFNLMYWII 426
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 20.2 bits (40), Expect = 9.1
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = -3
Query: 364 IHKCCXRRMYWILPGLCL 311
IH C R YW L L L
Sbjct: 81 IHPCSSFRFYWDLCMLLL 98
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 20.2 bits (40), Expect = 9.1
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = -3
Query: 364 IHKCCXRRMYWILPGLCL 311
IH C R YW L L L
Sbjct: 81 IHPCSSFRFYWDLCMLLL 98
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 20.2 bits (40), Expect = 9.1
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = -3
Query: 364 IHKCCXRRMYWILPGLCL 311
IH C R YW L L L
Sbjct: 81 IHPCSSFRFYWDLCMLLL 98
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 20.2 bits (40), Expect = 9.1
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = -2
Query: 290 PVDDTLPSRLSECIHKCCYRRMYWIL 213
P D SR+ + C+ MYWI+
Sbjct: 339 PSDIDKYSRIVFPVCFVCFNLMYWII 364
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,628
Number of Sequences: 438
Number of extensions: 2000
Number of successful extensions: 14
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 9885360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
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