Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV1016.Seq
(399 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g14920.1 68418.m01750 gibberellin-regulated family protein si... 34 0.030
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1... 33 0.093
At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin fa... 31 0.37
At5g17780.1 68418.m02085 hydrolase, alpha/beta fold family prote... 30 0.49
At1g53130.1 68414.m06016 stigma-specific Stig1 family protein si... 30 0.49
At3g61670.1 68416.m06911 expressed protein weak similarity to ex... 29 0.86
At2g29850.1 68415.m03625 hypothetical protein 29 0.86
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel... 29 1.5
At3g03790.2 68416.m00389 ankyrin repeat family protein / regulat... 29 1.5
At3g03790.1 68416.m00388 ankyrin repeat family protein / regulat... 29 1.5
At1g19270.1 68414.m02397 ubiquitin interaction motif-containing ... 29 1.5
At3g62680.1 68416.m07041 proline-rich family protein contains pr... 28 2.0
At1g69280.1 68414.m07943 expressed protein 28 2.6
At4g34930.1 68417.m04952 1-phosphatidylinositol phosphodiesteras... 27 3.5
At1g12040.1 68414.m01390 leucine-rich repeat family protein / ex... 27 3.5
At3g07930.1 68416.m00968 HhH-GPD base excision DNA repair family... 27 4.6
At2g27380.1 68415.m03302 proline-rich family protein contains pr... 27 4.6
At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (... 26 8.0
At1g54970.1 68414.m06278 proline-rich family protein similar to ... 26 8.0
>At5g14920.1 68418.m01750 gibberellin-regulated family protein
similar to SP|P46689 Gibberellin-regulated protein 1
precursor {Arabidopsis thaliana}; contains Pfam profile
PF02704: Gibberellin regulated protein
Length = 275
Score = 34.3 bits (75), Expect = 0.030
Identities = 24/74 (32%), Positives = 29/74 (39%)
Frame = +3
Query: 30 PTVVMEVYHPPAVPVTLIQTQTARDPVHPVVAALMDTVPTVVMEVYHPPAVPVTLMQAQT 209
P V Y PP PV + T PV P T P V Y+PP PV A
Sbjct: 150 PPVQPPTYKPPTSPV---KPPTTTPPVKPPT-----TTPPVQPPTYNPPTTPVKPPTAPP 201
Query: 210 LQDPVHPAVAALMD 251
++ P P V +D
Sbjct: 202 VKPPTPPPVRTRID 215
Score = 30.3 bits (65), Expect = 0.49
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = +3
Query: 51 YHPPAVPVTLIQTQTARDPVHPVVAALMDTVPTV-VMEVYHPPAVPVT 191
Y PP +P T I+ T + PV P + P V + PP P T
Sbjct: 59 YKPPTLPTTPIKPPTTKPPVKPPTIPVTPVKPPVSTPPIKLPPVQPPT 106
Score = 29.1 bits (62), Expect = 1.1
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = +3
Query: 24 TVPTVVMEVYHPPAVPVTLIQTQTARDPVHPVVAALMDTVP 146
T P V Y+PP PV + P P V +D VP
Sbjct: 178 TTPPVQPPTYNPPTTPVKPPTAPPVKPPTPPPVRTRIDCVP 218
Score = 27.5 bits (58), Expect = 3.5
Identities = 14/42 (33%), Positives = 17/42 (40%)
Frame = +2
Query: 257 PTVVMEVYHPPAVPVTLMQAQTWQDPVHPAVAALMDXASDCG 382
P V Y+PP PV A + P P V +D CG
Sbjct: 180 PPVQPPTYNPPTTPVKPPTAPPVKPPTPPPVRTRIDCVPLCG 221
>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
non-consensus splice site at the intron:exon boundary
(AT:exon)
Length = 247
Score = 32.7 bits (71), Expect = 0.093
Identities = 26/67 (38%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Frame = +3
Query: 57 PPAVPVTLIQTQTARDPVH---PVVAALMDTVPTVVMEVYHPPAVPVTLMQAQTLQDPVH 227
P A PVT T TA P P AA T T + PPA PVT A T P
Sbjct: 27 PAASPVT--STTTAPPPTTAAPPTTAAPPPTTTTPPVSAAQPPASPVTPPPAVTPTSPPA 84
Query: 228 PAVAALM 248
P VA ++
Sbjct: 85 PKVAPVI 91
Score = 26.6 bits (56), Expect = 6.1
Identities = 19/62 (30%), Positives = 23/62 (37%)
Frame = +3
Query: 9 AALMDTVPTVVMEVYHPPAVPVTLIQTQTARDPVHPVVAALMDTVPTVVMEVYHPPAVPV 188
AA T T + PPA PVT T P P VA ++ PPA
Sbjct: 50 AAPPPTTTTPPVSAAQPPASPVTPPPAVTPTSPPAPKVAPVISPATPPPQPPQSPPASAP 109
Query: 189 TL 194
T+
Sbjct: 110 TV 111
>At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin
family protein similar to arabinogalactan protein
[Daucus carota] GI:11322245; contains Pfam profile
PF01190: Pollen proteins Ole e I family
Length = 359
Score = 30.7 bits (66), Expect = 0.37
Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
Frame = +3
Query: 30 PTVVMEVYHPPAVPVTLIQTQTARDPVHPVVAALM--DTVPTVVMEVYHPPAVPVTLMQA 203
P V VY P PV + PV+P A + T P V VY P PV
Sbjct: 118 PPVKPPVYPPTKAPVKPPTKPPVKPPVYPPTKAPVKPPTKPPVKPPVYPPTKAPVKPPTK 177
Query: 204 QTLQDPVHP 230
++ PV P
Sbjct: 178 PPVKPPVSP 186
Score = 27.1 bits (57), Expect = 4.6
Identities = 23/74 (31%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Frame = +3
Query: 24 TVPTVVMEVYHPPAVPVTLIQTQTARDPVHPVVAALM--DTVPTVVMEVYHPPAVPVTLM 197
T P V VY P PV + PV+P A + T P V V P PV
Sbjct: 136 TKPPVKPPVYPPTKAPVKPPTKPPVKPPVYPPTKAPVKPPTKPPVKPPVSPPAKPPVKPP 195
Query: 198 QAQTLQDPVHPAVA 239
+ PV P V+
Sbjct: 196 VYPPTKAPVKPPVS 209
Score = 26.6 bits (56), Expect = 6.1
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Frame = +3
Query: 57 PPAVPVTLIQTQTARDPVHPVVAALMD--TVPTVVMEVYHPPAVPVTLMQAQTLQDPVHP 230
P PV+ + PV+P A + T P V VY P PV ++ PV+P
Sbjct: 107 PVKPPVSPPAKPPVKPPVYPPTKAPVKPPTKPPVKPPVYPPTKAPVKPPTKPPVKPPVYP 166
Query: 231 AVAA 242
A
Sbjct: 167 PTKA 170
>At5g17780.1 68418.m02085 hydrolase, alpha/beta fold family protein
low similarity to SP|Q02104 Lipase 1 precursor (EC
3.1.1.3) (Triacylglycerol lipase) {Psychrobacter
immobilis}, SP|P27747|ACOC_ALCEU Dihydrolipoamide
acetyltransferase component of acetoin cleaving system
(EC 2.3.1.12) [Ralstonia eutropha] {Alcaligenes
eutrophus}; contains Pfam profile PF00561: hydrolase,
alpha/beta fold family
Length = 417
Score = 30.3 bits (65), Expect = 0.49
Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = -2
Query: 140 CIHKCCYHRMY-WIPR-CLSLNQCYWNCRWMI-HFHHDCWNCIH 18
C C +H+++ W+ + C+ + +W + + H HH W+ +H
Sbjct: 292 CFIICKHHKIWEWLIKLCIGKREIHWKIKDITRHTHHSAWHSMH 335
>At1g53130.1 68414.m06016 stigma-specific Stig1 family protein
similar to stigma-specific protein STIG1 [Nicotiana
tabacum] GI:496647; contains Pfam profile PF04885:
Stigma-specific protein, Stig1
Length = 168
Score = 30.3 bits (65), Expect = 0.49
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = -2
Query: 200 LHQCYWNCRWMIHFHHDCWNCIHKCCYHRMYWIPRCLSLNQCYWNCRWMIHFHHDCWNCI 21
LH C +CR ++ ++C C HKC + + RC C C ++ + C C
Sbjct: 102 LHCCKKHCRNVLGDRNNCGRCGHKCGFGQ-----RC-----CGGVCTYVNFNPNHCGKCT 151
Query: 20 HKC 12
KC
Sbjct: 152 RKC 154
>At3g61670.1 68416.m06911 expressed protein weak similarity to
extra-large G-protein [Arabidopsis thaliana] GI:3201682
Length = 790
Score = 29.5 bits (63), Expect = 0.86
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -2
Query: 164 HFHHDCWNCIHKCCYHRMYW 105
HFHH +C H CY YW
Sbjct: 322 HFHHSSCSCYH--CYDNKYW 339
>At2g29850.1 68415.m03625 hypothetical protein
Length = 284
Score = 29.5 bits (63), Expect = 0.86
Identities = 18/65 (27%), Positives = 28/65 (43%)
Frame = +3
Query: 24 TVPTVVMEVYHPPAVPVTLIQTQTARDPVHPVVAALMDTVPTVVMEVYHPPAVPVTLMQA 203
T P V + A P IQ T+ D +P+ AAL ++ E+Y L Q
Sbjct: 120 TDPAYYYPVLYSTAAPAATIQWPTSTDFAYPLAAALQTLPDDMLQELYQQCQRQSQLQQN 179
Query: 204 QTLQD 218
+L++
Sbjct: 180 FSLEE 184
>At3g19430.1 68416.m02464 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 559
Score = 28.7 bits (61), Expect = 1.5
Identities = 19/69 (27%), Positives = 27/69 (39%)
Frame = +3
Query: 24 TVPTVVMEVYHPPAVPVTLIQTQTARDPVHPVVAALMDTVPTVVMEVYHPPAVPVTLMQA 203
+VP+ V PP P + + T PV P +VP+ V PP P + +
Sbjct: 107 SVPSPTPPVSPPPPTPTPSVPSPTP--PVSPPPPTPTPSVPSPTPPVSPPPPTPTPSVPS 164
Query: 204 QTLQDPVHP 230
T P P
Sbjct: 165 PTPPVPTDP 173
>At3g03790.2 68416.m00389 ankyrin repeat family protein / regulator
of chromosome condensation (RCC1) family protein similar
to hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
contains Pfam PF00415: Regulator of chromosome
condensation (RCC1); contains Pfam PF00023: Ankyrin
repeat; similar to rjs (GI:3414809) [Mus musculus];
similar to HERC2 (GI:4079809) [Homo sapiens]
Length = 1081
Score = 28.7 bits (61), Expect = 1.5
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 126 ALMDTVPTVVMEVYHPPAVPVTLMQAQTLQ 215
A+ +T VV +YHP P+ L ++QTLQ
Sbjct: 497 AVGETHLLVVGSLYHPAYAPIVLKKSQTLQ 526
>At3g03790.1 68416.m00388 ankyrin repeat family protein / regulator
of chromosome condensation (RCC1) family protein similar
to hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
contains Pfam PF00415: Regulator of chromosome
condensation (RCC1); contains Pfam PF00023: Ankyrin
repeat; similar to rjs (GI:3414809) [Mus musculus];
similar to HERC2 (GI:4079809) [Homo sapiens]
Length = 1078
Score = 28.7 bits (61), Expect = 1.5
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 126 ALMDTVPTVVMEVYHPPAVPVTLMQAQTLQ 215
A+ +T VV +YHP P+ L ++QTLQ
Sbjct: 494 AVGETHLLVVGSLYHPAYAPIVLKKSQTLQ 523
>At1g19270.1 68414.m02397 ubiquitin interaction motif-containing
protein / LIM domain-containing protein weak similarity
to LIM-homeobox protein [Mus musculus] GI:2149584, Hic-5
[Mus musculus] GI:664955; contains Pfam profiles
PF02809: Ubiquitin interaction motif, PF00412: LIM
domain
Length = 532
Score = 28.7 bits (61), Expect = 1.5
Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Frame = -2
Query: 248 HKCCYRRMYWIL*GLCLHQCYWNCRWMIHFH-HDCWNCIHKCC-YHRMYWIPRCLS 87
HK CYR Y +C H N +I + H W + K C H PRC S
Sbjct: 220 HKACYRERYHPKCDVCSHFIPTNHAGLIEYRAHPFW--VQKYCPSHEHDATPRCCS 273
>At3g62680.1 68416.m07041 proline-rich family protein contains
proline-rich region, INTERPRO:IPR000694
Length = 313
Score = 28.3 bits (60), Expect = 2.0
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 11/79 (13%)
Frame = +3
Query: 24 TVPTVVMEVYHPPA---VPVTLIQTQ-TARDPVH------PVVAALMDTVPTVVMEVYHP 173
T PT+ VY PP P + T+ T PV+ P ++ + T PT+ VY P
Sbjct: 62 TKPTIPPPVYTPPVYKHTPSPPVYTKPTIPPPVYTPPVYKPTLSPPVYTKPTIPPPVYTP 121
Query: 174 PAV-PVTLMQAQTLQDPVH 227
P P + T+ PV+
Sbjct: 122 PVYKPTPVYTKPTIPPPVY 140
Score = 26.2 bits (55), Expect = 8.0
Identities = 19/69 (27%), Positives = 26/69 (37%)
Frame = +3
Query: 30 PTVVMEVYHPPAVPVTLIQTQTARDPVHPVVAALMDTVPTVVMEVYHPPAVPVTLMQAQT 209
PT+ VY P +P + + P V T PT+ VY PP TL
Sbjct: 54 PTLSPPVYTKPTIPPPVYTPPVYKHTPSPPVY----TKPTIPPPVYTPPVYKPTLSPPVY 109
Query: 210 LQDPVHPAV 236
+ + P V
Sbjct: 110 TKPTIPPPV 118
>At1g69280.1 68414.m07943 expressed protein
Length = 400
Score = 27.9 bits (59), Expect = 2.6
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 12/69 (17%)
Frame = -2
Query: 179 CRWMIHFHHD-CWNCIH-KCCYHRMYWIPR---CLSLNQCYW-------NCRWMIHFHHD 36
C W+ + C++C C + + R C + C W +C W+ H
Sbjct: 300 CSWLCCKNTGPCFSCCRLPSCGYNFFCCKRLKCCPCFSWCRWPSCDYNSSCGWLFCCHWS 359
Query: 35 CWNCIHKCC 9
CW+C CC
Sbjct: 360 CWSCC--CC 366
Score = 27.1 bits (57), Expect = 4.6
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 7/34 (20%)
Frame = -2
Query: 203 CLHQCYW-------NCRWMIHFHHDCWNCIHKCC 123
C C W +C W+ H CW+C CC
Sbjct: 335 CFSWCRWPSCDYNSSCGWLFCCHWSCWSCC--CC 366
>At4g34930.1 68417.m04952 1-phosphatidylinositol
phosphodiesterase-related contains weak similarity to
1-phosphatidylinositol phosphodiesterase precursor (EC
4.6.1.13) (Phosphatidylinositol diacylglycerol-lyase)
(Phosphatidylinositol- specific phospholipase C)
(PI-PLC). (Swiss-Prot:P34024) [Listeria monocytogenes]
Length = 391
Score = 27.5 bits (58), Expect = 3.5
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +3
Query: 3 VVAALMDTVPTVVMEVYHPPAVPVTLIQTQTARDPVHPVVAALMDTVPTVVMEVYHP 173
VV+ D+ +VV EV +P + V+P V+ D+ TVV +V +P
Sbjct: 11 VVSFANDSAKSVVEEVVNPTVSFANNSARTVVEEVVNPTVSFANDSARTVVEKVLNP 67
>At1g12040.1 68414.m01390 leucine-rich repeat family protein /
extensin family protein (LRX1) similar to extensin-like
protein [Lycopersicon esculentum]
gi|5917664|gb|AAD55979; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 744
Score = 27.5 bits (58), Expect = 3.5
Identities = 16/59 (27%), Positives = 22/59 (37%)
Frame = +3
Query: 57 PPAVPVTLIQTQTARDPVHPVVAALMDTVPTVVMEVYHPPAVPVTLMQAQTLQDPVHPA 233
PP PV Q + P P+ + P VY+PP P + PV P+
Sbjct: 598 PPPSPVYYPQVTPSPPPPSPLYYPPVTPSPPPPSPVYYPPVTPSPPPPSPVYYPPVTPS 656
>At3g07930.1 68416.m00968 HhH-GPD base excision DNA repair family
protein
Length = 352
Score = 27.1 bits (57), Expect = 4.6
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +2
Query: 284 PPAVPVTLMQAQTWQDPVHP-AVAALMDXASDCG 382
PP P L+Q W DP + L++ SD G
Sbjct: 309 PPRSPCNLLQEDHWHDPWRVLVICMLLNKTSDAG 342
>At2g27380.1 68415.m03302 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 761
Score = 27.1 bits (57), Expect = 4.6
Identities = 16/61 (26%), Positives = 25/61 (40%)
Frame = +3
Query: 48 VYHPPAVPVTLIQTQTARDPVHPVVAALMDTVPTVVMEVYHPPAVPVTLMQAQTLQDPVH 227
+Y PP P + + T P++P T PT +Y P P+ T P++
Sbjct: 62 IYSPPIYPPPIQKPPTYSPPIYPPPIQKPPT-PTYSPPIYPP---PIQKPPTPTYSPPIY 117
Query: 228 P 230
P
Sbjct: 118 P 118
>At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (Atm)
identical to ataxia-telangiectasia mutated protein (Atm)
[Arabidopsis thaliana] GI:7529272; contains Pfam profile
PF00855: PWWP domain; contains GA donor splice site at
exon 73
Length = 3255
Score = 26.2 bits (55), Expect = 8.0
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -3
Query: 337 YWILPGLCLHQCYWNCRWM 281
+W+LP L LH+ + N W+
Sbjct: 2015 HWLLPALLLHEDHTNLDWV 2033
>At1g54970.1 68414.m06278 proline-rich family protein similar to
proline-rich protein GI:170048 from [Glycine max]
Length = 335
Score = 26.2 bits (55), Expect = 8.0
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Frame = +3
Query: 30 PTVVMEVYHPPAVPVTL---IQTQ-TARDPVH-PVVAALMDTVPTVVMEVYHPPAVPVTL 194
PT+ VY PP TL + T+ T PV P ++ + T PT+ VY P P +
Sbjct: 93 PTLPAPVYTPPVYKPTLSPPVYTKPTLLPPVFKPTLSPPVYTKPTLSPTVYKPTLSP-PV 151
Query: 195 MQAQTLQDPVH 227
+L PV+
Sbjct: 152 NNKPSLSPPVY 162
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,493,873
Number of Sequences: 28952
Number of extensions: 147198
Number of successful extensions: 422
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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