Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV1015.Seq
(459 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 78 4e-15
03_01_0547 + 4093196-4093657,4094267-4095148 78 4e-15
03_01_0544 + 4082528-4082989,4083585-4084466 78 4e-15
03_01_0543 + 4076981-4077442,4078145-4079026 78 4e-15
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 35 0.036
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 33 0.11
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 33 0.11
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299... 31 0.45
11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903 29 2.4
11_01_0324 - 2428035-2428514 28 3.1
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581... 27 5.5
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 77.8 bits (183), Expect = 4e-15
Identities = 35/52 (67%), Positives = 43/52 (82%)
Frame = -2
Query: 419 IVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGKVT 264
+V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V K+ G KVT
Sbjct: 389 MVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTGAKVT 440
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 77.8 bits (183), Expect = 4e-15
Identities = 35/52 (67%), Positives = 43/52 (82%)
Frame = -2
Query: 419 IVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGKVT 264
+V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V K+ G KVT
Sbjct: 389 MVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTGAKVT 440
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 77.8 bits (183), Expect = 4e-15
Identities = 35/52 (67%), Positives = 43/52 (82%)
Frame = -2
Query: 419 IVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGKVT 264
+V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V K+ G KVT
Sbjct: 389 MVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTGAKVT 440
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 77.8 bits (183), Expect = 4e-15
Identities = 35/52 (67%), Positives = 43/52 (82%)
Frame = -2
Query: 419 IVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGKVT 264
+V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V K+ G KVT
Sbjct: 389 MVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTGAKVT 440
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 34.7 bits (76), Expect = 0.036
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -2
Query: 419 IVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 297
++ + K +CVE F LGR +R T+AVG++ V
Sbjct: 610 VIEVKLEKEVCVEEFSNLKALGRVFLRSQGNTIAVGIVSRV 650
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 33.1 bits (72), Expect = 0.11
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -2
Query: 419 IVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 306
+V + P+CV+ F + LGR +R T+AVGV+
Sbjct: 634 VVQVTLDAPVCVQEFSKCRALGRAFLRSSGSTIAVGVV 671
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 33.1 bits (72), Expect = 0.11
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -2
Query: 419 IVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 306
+V + P+CV+ F + LGR +R T+AVGV+
Sbjct: 634 VVQVTLDAPVCVQEFSKCRALGRAFLRSSGSTIAVGVV 671
>04_03_0107 +
11328267-11328276,11329059-11329170,11329862-11329907,
11330185-11330256,11332292-11332303,11332880-11332942,
11333038-11333192,11333303-11333367,11334645-11334795,
11335230-11335335,11335440-11335575,11336310-11336374,
11337003-11337188,11337298-11337399
Length = 426
Score = 31.1 bits (67), Expect = 0.45
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = -2
Query: 392 LCVESFQEFPPLGRFAVR 339
+C+E+F +FP LGRF +R
Sbjct: 398 ICIENFSDFPQLGRFTLR 415
>11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903
Length = 1135
Score = 28.7 bits (61), Expect = 2.4
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +1
Query: 88 NYKIMLHYKPCKKYRKGMSL*P-FFPSK 168
N M PCKK +KGM++ P FF SK
Sbjct: 657 NVNKMSKLNPCKKQKKGMNILPKFFTSK 684
>11_01_0324 - 2428035-2428514
Length = 159
Score = 28.3 bits (60), Expect = 3.1
Identities = 21/65 (32%), Positives = 25/65 (38%), Gaps = 6/65 (9%)
Frame = +1
Query: 274 PPPASLKLTALMTPTATVCLMSRTAKRPRGGNSWKDST------HRGLEGTKLTMGCXSR 435
PPP L+L+ L+ + R G WK T HR EG L C R
Sbjct: 39 PPPLLLRLSTLLA----ISDPQRLVAEDDGRQHWKGYTGAGMCRHRCTEGHHLRYRCCFR 94
Query: 436 LDGFW 450
DG W
Sbjct: 95 SDGRW 99
>01_06_0575 -
30357556-30357582,30357698-30357944,30358039-30358161,
30358275-30358301,30358475-30358633,30359764-30359948,
30360225-30360293,30360432-30362354,30363018-30363339,
30363506-30363543
Length = 1039
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 304 LMTPTATVCLMSRTAKRPRGGNSWKDST 387
LM T +VC S+ + P G W DST
Sbjct: 624 LMGKTVSVCERSKEHRVPTMGKGWSDST 651
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,254,606
Number of Sequences: 37544
Number of extensions: 200362
Number of successful extensions: 516
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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