Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1015.Seq
         (459 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51994-7|AAO21384.1|  429|Caenorhabditis elegans Elongation fact...    81   3e-16
U51994-6|AAA96068.1|  463|Caenorhabditis elegans Elongation fact...    81   3e-16
U40935-2|AAA81688.1|  463|Caenorhabditis elegans Elongation fact...    81   3e-16
Z92835-1|CAB07395.2|  532|Caenorhabditis elegans Hypothetical pr...    41   5e-04
AL033514-38|CAA22111.2|  341|Caenorhabditis elegans Hypothetical...    29   1.6  
AF036700-1|AAB88364.1|  258|Caenorhabditis elegans Hypothetical ...    27   6.6  
AC006708-23|AAF60414.1|  975|Caenorhabditis elegans Paz/piwi dom...    27   6.6  
AF047657-1|AAK18951.1|  328|Caenorhabditis elegans Serpentine re...    27   8.7  
AC024791-32|AAY55887.1|  212|Caenorhabditis elegans Hypothetical...    27   8.7  

>U51994-7|AAO21384.1|  429|Caenorhabditis elegans Elongation factor
           protein 4, isoformd protein.
          Length = 429

 Score = 81.4 bits (192), Expect = 3e-16
 Identities = 37/52 (71%), Positives = 43/52 (82%)
 Frame = -2

Query: 419 IVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGKVT 264
           IV L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK+V   +   GKVT
Sbjct: 367 IVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSVEKSDGSSGKVT 418


>U51994-6|AAA96068.1|  463|Caenorhabditis elegans Elongation factor
           protein 4, isoforma protein.
          Length = 463

 Score = 81.4 bits (192), Expect = 3e-16
 Identities = 37/52 (71%), Positives = 43/52 (82%)
 Frame = -2

Query: 419 IVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGKVT 264
           IV L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK+V   +   GKVT
Sbjct: 401 IVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSVEKSDGSSGKVT 452


>U40935-2|AAA81688.1|  463|Caenorhabditis elegans Elongation factor
           protein 3 protein.
          Length = 463

 Score = 81.4 bits (192), Expect = 3e-16
 Identities = 37/52 (71%), Positives = 43/52 (82%)
 Frame = -2

Query: 419 IVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGKVT 264
           IV L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK+V   +   GKVT
Sbjct: 401 IVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSVEKSDGSSGKVT 452


>Z92835-1|CAB07395.2|  532|Caenorhabditis elegans Hypothetical
           protein H19N07.1 protein.
          Length = 532

 Score = 40.7 bits (91), Expect = 5e-04
 Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
 Frame = -2

Query: 419 IVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVG-VIKAV 297
           I+ L   +P  +E F+E+P LGRF +RD  +T+A+G V+K V
Sbjct: 490 IMRLESPEPFVLEPFKEYPYLGRFTLRDEGKTIAIGKVLKVV 531


>AL033514-38|CAA22111.2|  341|Caenorhabditis elegans Hypothetical
           protein Y75B8A.33 protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -3

Query: 157 KRATNSFLFYIFYKACNVTLFYNLYKVIHNISETFC 50
           KR  NS++F I+   C +  F   Y++   +   +C
Sbjct: 262 KRDVNSYVFVIWGVVCQILFFLTTYRIAELVVRIYC 297


>AF036700-1|AAB88364.1|  258|Caenorhabditis elegans Hypothetical
           protein M04G7.1 protein.
          Length = 258

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 295 LTALMTP-TATVCLMSRTAKRPRGGNSWKDSTHRG 396
           + AL  P T ++CL +   K P  GN+  D T RG
Sbjct: 174 MMALYCPRTCSLCLWAAATKIPNCGNTLPDCTTRG 208


>AC006708-23|AAF60414.1|  975|Caenorhabditis elegans Paz/piwi
           domain-containing protein2 protein.
          Length = 975

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -3

Query: 202 HTTAILHSPKGVSKEKRATNSFLFYIFYKACNVTLFYNL 86
           H TA L S K V+  K+    F+ +  ++ C+  LF+ L
Sbjct: 107 HITAELSSKKEVTFTKKGKEDFIVHDRHEKCSAILFHAL 145


>AF047657-1|AAK18951.1|  328|Caenorhabditis elegans Serpentine
           receptor, class j protein54 protein.
          Length = 328

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -1

Query: 228 LELLTAQFFIQLRYFIHRKVFRRKKGLQTHSFSIFFT 118
           + L+ A + + L +FI+R +      L TH F  + T
Sbjct: 96  ISLVAASYAVLLTHFIYRYLVIHNSSLATHKFHWYLT 132


>AC024791-32|AAY55887.1|  212|Caenorhabditis elegans Hypothetical
           protein Y47G6A.31 protein.
          Length = 212

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 97  FYNLYKVIHNISETFCYDC 41
           F +L K++ N   TFCY C
Sbjct: 44  FQHLPKLLENCGHTFCYSC 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,737,163
Number of Sequences: 27780
Number of extensions: 179168
Number of successful extensions: 435
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)