Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1015.Seq
         (459 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    91   7e-21
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    85   3e-19
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    24   0.91 
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    24   0.91 
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    24   0.91 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   1.2  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    23   2.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   6.4  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    21   8.5  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 90.6 bits (215), Expect = 7e-21
 Identities = 44/52 (84%), Positives = 47/52 (90%)
 Frame = -2

Query: 419 IVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGKVT 264
           IV LVPSKP+C E+FQEFPPLGRFAVRDMRQTVAVGVIKAV FK+A  GKVT
Sbjct: 401 IVMLVPSKPMCAEAFQEFPPLGRFAVRDMRQTVAVGVIKAVTFKDA-AGKVT 451



 Score = 22.6 bits (46), Expect = 2.1
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -1

Query: 459 EVNPKXIKSGXAA 421
           E NPK IKSG AA
Sbjct: 388 EENPKSIKSGDAA 400


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 85.0 bits (201), Expect = 3e-19
 Identities = 41/52 (78%), Positives = 46/52 (88%)
 Frame = -2

Query: 419 IVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGKVT 264
           IV L P+KP+CVE+FQEFPPLGRFAVRDMRQTVAVGVIK+V FK+   GKVT
Sbjct: 401 IVMLQPTKPMCVEAFQEFPPLGRFAVRDMRQTVAVGVIKSVTFKDT-QGKVT 451



 Score = 22.6 bits (46), Expect = 2.1
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -1

Query: 459 EVNPKXIKSGXAA 421
           E NPK IKSG AA
Sbjct: 388 EENPKSIKSGDAA 400


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 23.8 bits (49), Expect = 0.91
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 185 KYRSCMKNCAVNSSSYFLPLVAF 253
           K+  C+KN A   SSYF+  + F
Sbjct: 94  KFYDCLKNSADTISSYFVGKMYF 116


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 23.8 bits (49), Expect = 0.91
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 185 KYRSCMKNCAVNSSSYFLPLVAF 253
           K+  C+KN A   SSYF+  + F
Sbjct: 99  KFYDCLKNSADTISSYFVGKMYF 121


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 23.8 bits (49), Expect = 0.91
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 185 KYRSCMKNCAVNSSSYFLPLVAF 253
           K+  C+KN A   SSYF+  + F
Sbjct: 99  KFYDCLKNSADTISSYFVGKMYF 121


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 146 CSPFFLRNTFR*MKYRSCMKN 208
           C  FF R+  + ++YR C KN
Sbjct: 87  CKGFFRRSIQQKIQYRPCTKN 107


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -1

Query: 459 EVNPKXIKSGXAA 421
           E NPK IKSG AA
Sbjct: 99  EENPKSIKSGDAA 111


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -3

Query: 424 SPLSTWYLPSL 392
           +P+  WY+PSL
Sbjct: 591 NPVQLWYVPSL 601


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 155 FFLRNTFR*MKYRSCMKN 208
           FF R+  + ++YR C KN
Sbjct: 41  FFRRSIQQKIQYRPCTKN 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,451
Number of Sequences: 438
Number of extensions: 2193
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12189771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)