Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1015.Seq
         (459 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ...    78   2e-15
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ...    78   2e-15
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ...    78   2e-15
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ...    78   2e-15
At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-...    71   3e-13
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,...    38   0.002
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E...    33   0.12 
At1g55420.1 68414.m06339 DC1 domain-containing protein contains ...    29   2.0  
At1g55380.1 68414.m06334 DC1 domain-containing protein contains ...    28   3.5  
At5g42860.1 68418.m05224 expressed protein                             23   5.5  
At2g04500.1 68415.m00455 DC1 domain-containing protein contains ...    27   6.1  

>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
           identical to SWISS-PROT:P13905 elongation factor 1-alpha
           (EF-1-alpha) [Arabidopsis thaliana]
          Length = 449

 Score = 78.2 bits (184), Expect = 2e-15
 Identities = 35/52 (67%), Positives = 44/52 (84%)
 Frame = -2

Query: 419 IVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGKVT 264
           +V + P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+ K+  G KVT
Sbjct: 389 MVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPTGAKVT 440


>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
           identical to GB:CAA34456 from [Arabidopsis thaliana]
           (Plant Mol. Biol. 14 (1), 107-110 (1990))
          Length = 449

 Score = 78.2 bits (184), Expect = 2e-15
 Identities = 35/52 (67%), Positives = 44/52 (84%)
 Frame = -2

Query: 419 IVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGKVT 264
           +V + P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+ K+  G KVT
Sbjct: 389 MVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPTGAKVT 440


>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
           identical to GB:CAA34456 from [Arabidopsis thaliana]
           (Plant Mol. Biol. 14 (1), 107-110 (1990))
          Length = 449

 Score = 78.2 bits (184), Expect = 2e-15
 Identities = 35/52 (67%), Positives = 44/52 (84%)
 Frame = -2

Query: 419 IVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGKVT 264
           +V + P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+ K+  G KVT
Sbjct: 389 MVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPTGAKVT 440


>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
           identical to GB:CAA34456 from [Arabidopsis thaliana]
           (Plant Mol. Biol. 14 (1), 107-110 (1990))
          Length = 449

 Score = 78.2 bits (184), Expect = 2e-15
 Identities = 35/52 (67%), Positives = 44/52 (84%)
 Frame = -2

Query: 419 IVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGKVT 264
           +V + P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+ K+  G KVT
Sbjct: 389 MVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPTGAKVT 440


>At1g35550.1 68414.m04414 elongation factor Tu C-terminal
           domain-containing protein similar to SP|P13905
           Elongation factor 1-alpha (EF-1-alpha) {Arabidopsis
           thaliana}; contains Pfam profile PF03143: Elongation
           factor Tu C-terminal domain
          Length = 104

 Score = 71.3 bits (167), Expect = 3e-13
 Identities = 30/50 (60%), Positives = 40/50 (80%)
 Frame = -2

Query: 419 IVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGK 270
           I+N+ P+KP+ VE++  +PPLGRFA+RDMRQTV VGVIK+V  K+  G K
Sbjct: 55  IINMTPTKPMVVEAYSAYPPLGRFAIRDMRQTVGVGVIKSVVKKDPSGAK 104


>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
           putative similar to EF-1-alpha-related GTP-binding
           protein gi|1009232|gb|AAA79032
          Length = 532

 Score = 38.3 bits (85), Expect = 0.002
 Identities = 14/29 (48%), Positives = 21/29 (72%)
 Frame = -2

Query: 392 LCVESFQEFPPLGRFAVRDMRQTVAVGVI 306
           +C+E F +FP LGRF +R   +T+AVG +
Sbjct: 494 ICIEKFSDFPQLGRFTLRTEGKTIAVGKV 522


>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
           EF-1-alpha, putative contains similarity to
           SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
           [Aeropyrum pernix]
          Length = 667

 Score = 32.7 bits (71), Expect = 0.12
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -2

Query: 395 PLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 297
           P+CVE+F E   LGR  +R   +TVA+G +  +
Sbjct: 631 PVCVETFSESRALGRVFLRSSGRTVAMGKVTRI 663


>At1g55420.1 68414.m06339 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 725

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
 Frame = -3

Query: 127 IFYKACN---VTLFYNLYKVIHNI--SETFCYDCKLKC 29
           I+ K C+   V LFY   ++  N   S  FCY C+L+C
Sbjct: 619 IYLKPCHIFKVGLFYKEVEIARNDGNSRLFCYICRLRC 656


>At1g55380.1 68414.m06334 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 661

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
 Frame = -3

Query: 127 IFYKACN---VTLFYNLYKVIHNI--SETFCYDCKLKC 29
           I+ K C+   V L+Y   ++  N   S  FCY C+L+C
Sbjct: 579 IYLKPCHIFKVGLYYKEVEIARNDGNSRLFCYTCELRC 616


>At5g42860.1 68418.m05224 expressed protein
          Length = 320

 Score = 23.4 bits (48), Expect(2) = 5.5
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 247 HQGQEVARAVNSTIFHTTAILHSPKGVSKEKRATNS 140
           H G++ A     T FH+T +L SP G      +++S
Sbjct: 36  HDGEKTA-----TSFHSTPVLTSPMGSPPHSHSSSS 66



 Score = 22.2 bits (45), Expect(2) = 5.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 424 SPLSTWYLPSLYV*SPSRNSH 362
           SP  +   P+ +V SPSR+SH
Sbjct: 16  SPTRSPRRPAYFVQSPSRDSH 36


>At2g04500.1 68415.m00455 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 495

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -3

Query: 73  HNISETFCYDCKLKCKF 23
           + ++  FC+ C+L+CKF
Sbjct: 444 NGVTRPFCFHCELRCKF 460


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,118,982
Number of Sequences: 28952
Number of extensions: 161450
Number of successful extensions: 411
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 762235320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)