Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1013.Seq
         (449 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   1.3  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   1.3  
EF532798-1|ABQ08060.1|   50|Tribolium castaneum acetylcholineste...    22   3.1  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   3.1  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   7.1  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    20   9.4  
AF263514-1|AAF74206.1|  127|Tribolium castaneum cytochrome P450 ...    20   9.4  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +1

Query: 61  GFDRRRGWRQVCRTPQRLRNRHHYQG 138
           G D++  W + CR  ++L  R ++ G
Sbjct: 579 GLDQQNQWCKPCRPREQLTWRRNFHG 604


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +1

Query: 61  GFDRRRGWRQVCRTPQRLRNRHHYQG 138
           G D++  W + CR  ++L  R ++ G
Sbjct: 471 GLDQQNQWCKPCRPREQLTWRRNFHG 496


>EF532798-1|ABQ08060.1|   50|Tribolium castaneum
           acetylcholinesterase protein.
          Length = 50

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 103 PQRLRNRHH 129
           PQRLR RHH
Sbjct: 21  PQRLRIRHH 29


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 5/14 (35%), Positives = 8/14 (57%)
 Frame = +3

Query: 369 HS*CWFWLASWSQL 410
           H   W+W+  WS +
Sbjct: 625 HLDAWYWVMDWSDM 638


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 422 FSAVKLGPRGXPEPTST 372
           F   K  P+G P P+ST
Sbjct: 64  FHPWKKSPQGAPSPSST 80


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 232 VQHLFGHLSC*THNQSV 182
           V+HL GHL      QS+
Sbjct: 132 VEHLLGHLQTDLMGQSI 148


>AF263514-1|AAF74206.1|  127|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 127

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1

Query: 103 PQRLRNRHHY 132
           P+R  NRH+Y
Sbjct: 115 PERTANRHYY 124


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,789
Number of Sequences: 336
Number of extensions: 1360
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10195961
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)