Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1013.Seq
         (449 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi...    31   0.062
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch...    27   1.8  
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    25   5.4  
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      25   7.1  
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac...    24   9.4  

>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 31.5 bits (68), Expect = 0.062
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +1

Query: 277 DNIDVDSAGKKGVGVINAPGANALSACEL 363
           + +D+D A ++G+ V N+P AN+ S  EL
Sbjct: 131 NQVDLDFAAERGIAVFNSPYANSRSVAEL 159


>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
           Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 106 QRLRNRHHYQGQDLQGRTSYGDTQPRRSG 192
           QR      ++G+  +GR +YG T P R G
Sbjct: 86  QRENRGSRFRGRGQRGRGNYGHTAPNRRG 114


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 7/51 (13%)
 Frame = -1

Query: 437 PNLPAFSA--VKLGPRGXP----EPTSTVQVSSHALSALAPGALITPT-PF 306
           P +PA     V +GP G P     P   V  S    +A  PGA + P  PF
Sbjct: 269 PGMPAMPMMNVPMGPGGAPLVPPPPPGMVMASPSPAAATIPGAPVMPNIPF 319


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
 Frame = -1

Query: 443 PGPNLPAFSAVKLGPRGXP-EPTST--VQVSSHALSALAPGAL 324
           P P LP F     GPR  P  P ST    +++   S L+ GAL
Sbjct: 4   PIPELPRFERRLTGPRAAPSSPVSTNGSPLNNLVRSRLSDGAL 46


>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 340

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 277 DNIDVDSAGKKGVGVINAP 333
           +N+DVD A + GV V N P
Sbjct: 95  NNVDVDWATRNGVYVANTP 113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,426,975
Number of Sequences: 5004
Number of extensions: 20422
Number of successful extensions: 59
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)