Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV1013.Seq
(449 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1392 + 33201015-33201600,33202030-33202406,33202528-332026... 37 0.009
06_03_0975 - 26471438-26472109,26472189-26472284,26472372-264724... 35 0.026
08_02_0846 - 21811156-21811833,21811960-21812055,21812157-218122... 32 0.24
12_01_0657 + 5567879-5568316 31 0.57
02_03_0288 - 17328805-17328828,17328888-17328989,17329069-173292... 29 1.3
12_01_0671 - 5702051-5702159,5702493-5703216,5703910-5704476,570... 27 5.3
11_01_0066 - 536281-537196,537397-537452 27 7.0
10_06_0169 + 11420115-11420163,11420922-11421041,11421938-114220... 27 7.0
05_07_0219 - 28474661-28475146,28475979-28476644 27 7.0
03_01_0455 + 3487354-3488090,3489172-3489255,3489942-3490554,349... 27 7.0
08_02_0250 + 14772746-14773037,14773141-14773203,14773458-147736... 27 9.2
07_01_0705 - 5313315-5315219,5315858-5315860 27 9.2
>04_04_1392 +
33201015-33201600,33202030-33202406,33202528-33202638,
33202720-33202815,33202899-33203570
Length = 613
Score = 36.7 bits (81), Expect = 0.009
Identities = 21/55 (38%), Positives = 33/55 (60%)
Frame = +2
Query: 59 SVLIVDGVGAKCAELLNAYGIATTTKAKISKEELLMEIPNHDALVVRSATQVTKE 223
+VL+ + +GA ELL + + +S EEL +IP DAL+VRS T+V ++
Sbjct: 73 TVLVAEKLGAAGLELLRGFANVDCSYG-LSPEELRAKIPLCDALIVRSGTKVGRD 126
Score = 32.3 bits (70), Expect = 0.19
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +1
Query: 277 DNIDVDSAGKKGVGVINAPGANALSACELTCTVDVGSGXPRGPSFTALKAGR 432
DN+D+ +A + G V+NAP AN ++A E + + +LKAG+
Sbjct: 146 DNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMSRNIAQADASLKAGK 197
>06_03_0975 -
26471438-26472109,26472189-26472284,26472372-26472482,
26472494-26472530,26472566-26472576,26472674-26473050,
26474310-26474895
Length = 629
Score = 35.1 bits (77), Expect = 0.026
Identities = 21/55 (38%), Positives = 33/55 (60%)
Frame = +2
Query: 59 SVLIVDGVGAKCAELLNAYGIATTTKAKISKEELLMEIPNHDALVVRSATQVTKE 223
+VL+ + +G ELL + +++ EEL ++ DALVVRSAT+VT+E
Sbjct: 73 TVLVTEKLGDAGLELLRRFANVDCAY-ELTAEELRAKVSLVDALVVRSATRVTRE 126
Score = 33.9 bits (74), Expect = 0.061
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +1
Query: 277 DNIDVDSAGKKGVGVINAPGANALSACELTCTVDVGSGXPRGPSFTALKAGR 432
DN+D+ +A + G V+NAP AN ++A E + + +LKAG+
Sbjct: 146 DNVDLQAATEAGCLVVNAPTANTVAAAEHAIALLAAMARNVAQADASLKAGK 197
>08_02_0846 -
21811156-21811833,21811960-21812055,21812157-21812267,
21812367-21812743,21814699-21814734,21815236-21815839
Length = 633
Score = 31.9 bits (69), Expect = 0.24
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = +2
Query: 143 ISKEELLMEIPNHDALVVRSATQVTKE 223
+S ELL ++ DAL+VRS T+VT+E
Sbjct: 106 MSPAELLAKVAQFDALIVRSGTKVTRE 132
Score = 31.9 bits (69), Expect = 0.24
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +1
Query: 277 DNIDVDSAGKKGVGVINAPGANALSACE 360
DN+D+ +A + G V+NAP AN ++A E
Sbjct: 152 DNVDLQAATEAGCLVVNAPTANTVAAAE 179
>12_01_0657 + 5567879-5568316
Length = 145
Score = 30.7 bits (66), Expect = 0.57
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -1
Query: 440 GPNLPAFSAVKLGPRGXPEPTSTVQVSSHALSALAPGALI 321
GP+LPA S ++ G PEP + V+ A A A +L+
Sbjct: 74 GPSLPALSEIRWGELLTPEPANAAAVALSAALAWAGASLL 113
>02_03_0288 -
17328805-17328828,17328888-17328989,17329069-17329239,
17329471-17329572,17331257-17331387,17335329-17335460,
17335616-17335792,17335897-17336077
Length = 339
Score = 29.5 bits (63), Expect = 1.3
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -1
Query: 428 PAFSAVKLGPRGXP-EPTSTVQVSSHALSALAPGAL 324
P+ SA +L PR P EP + ++ +ALAPG+L
Sbjct: 8 PSSSAARLPPRSTPPEPRPSPPAAAAGAAALAPGSL 43
>12_01_0671 -
5702051-5702159,5702493-5703216,5703910-5704476,
5704654-5704873,5705303-5707207
Length = 1174
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -1
Query: 404 GPRGXPEPTSTVQVSSHALSALAPG 330
GPRG + TST ++ S LS LAPG
Sbjct: 441 GPRGTGK-TSTARIFSMGLSCLAPG 464
>11_01_0066 - 536281-537196,537397-537452
Length = 323
Score = 27.1 bits (57), Expect = 7.0
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = -1
Query: 443 PGPNLPAFSAVKLGPRGXPEPTSTVQVSSHALSALAPGALITPTPFLPAESTS 285
P P P + + P P PT+TV+ P A +TPTP P + +
Sbjct: 238 PPPPSPTPTTTRASPTPPPIPTATVRPPPP-----LPRATVTPTPTTPPSTAT 285
>10_06_0169 +
11420115-11420163,11420922-11421041,11421938-11422053,
11422125-11422213,11422413-11422455,11423296-11423440,
11423581-11423688,11423767-11424086,11424255-11424671,
11424776-11425470,11425564-11426107,11426338-11426682,
11426799-11426909
Length = 1033
Score = 27.1 bits (57), Expect = 7.0
Identities = 15/22 (68%), Positives = 15/22 (68%)
Frame = -1
Query: 353 ALSALAPGALITPTPFLPAEST 288
AL A APGAL P P PAEST
Sbjct: 710 ALGA-APGALTDPHPNYPAEST 730
>05_07_0219 - 28474661-28475146,28475979-28476644
Length = 383
Score = 27.1 bits (57), Expect = 7.0
Identities = 19/56 (33%), Positives = 24/56 (42%)
Frame = -1
Query: 449 TEPGPNLPAFSAVKLGPRGXPEPTSTVQVSSHALSALAPGALITPTPFLPAESTSM 282
T P P+ P SA P P P S SS +A A +PTP P S ++
Sbjct: 72 TAPPPSPPPLSATT--PH--PPPPSPATSSSRTATATATATPTSPTPTPPPTSATL 123
>03_01_0455 +
3487354-3488090,3489172-3489255,3489942-3490554,
3491356-3491583,3492270-3492437,3492828-3494587,
3494667-3494670
Length = 1197
Score = 27.1 bits (57), Expect = 7.0
Identities = 18/55 (32%), Positives = 23/55 (41%)
Frame = -1
Query: 449 TEPGPNLPAFSAVKLGPRGXPEPTSTVQVSSHALSALAPGALITPTPFLPAESTS 285
TEP LP G G P P T+ S + P A TP PA++T+
Sbjct: 20 TEPHAPLP-----NTGGEGAPPPARTMPPPSSQAATSTPPAAATPLQRPPAQATA 69
>08_02_0250 +
14772746-14773037,14773141-14773203,14773458-14773621,
14774126-14774220,14774517-14774728,14774972-14775009,
14775131-14775424,14775510-14775617
Length = 421
Score = 26.6 bits (56), Expect = 9.2
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +3
Query: 381 WFWLASWSQLHCAEGWXVG 437
W W S + HC GW VG
Sbjct: 361 WLWCQSKNSGHCHIGWPVG 379
>07_01_0705 - 5313315-5315219,5315858-5315860
Length = 635
Score = 26.6 bits (56), Expect = 9.2
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 58 VGFDRRRGWRQVCRTPQRL 114
VGF R+ WR++ R PQ +
Sbjct: 366 VGFSNRQDWRKLLRLPQHI 384
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,376,447
Number of Sequences: 37544
Number of extensions: 171781
Number of successful extensions: 550
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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