Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV1013.Seq
(449 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7265| Best HMM Match : 2-Hacid_dh (HMM E-Value=0.00052) 40 8e-05
SB_4699| Best HMM Match : Lig_chan (HMM E-Value=1.1) 29 1.3
SB_25339| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_38912| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_21917| Best HMM Match : CXC (HMM E-Value=0.22) 27 5.4
SB_46200| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_25387| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_42589| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_5193| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_36985| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
>SB_7265| Best HMM Match : 2-Hacid_dh (HMM E-Value=0.00052)
Length = 126
Score = 40.3 bits (90), Expect(2) = 8e-05
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +2
Query: 47 VDIKSVLIVDGVGAKCAELLNAYGIATTTKAKISKEELLMEIP 175
+++K VLI D V + C +L G+ K+SKEEL+ EIP
Sbjct: 4 LELKRVLISDSVDSCCKTILERNGVTVDVNTKLSKEELVSEIP 46
Score = 22.6 bits (46), Expect(2) = 8e-05
Identities = 8/15 (53%), Positives = 14/15 (93%)
Frame = +2
Query: 179 HDALVVRSATQVTKE 223
+D L+VRSAT+V+++
Sbjct: 77 YDGLIVRSATKVSED 91
>SB_4699| Best HMM Match : Lig_chan (HMM E-Value=1.1)
Length = 186
Score = 29.5 bits (63), Expect = 1.3
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 91 VCRTPQRLRNRHHYQGQDLQGRTSYGDTQPR 183
+CR+ + RHH+ L G +SYG P+
Sbjct: 113 LCRSKRPYGLRHHHHASGLMGASSYGMAMPK 143
>SB_25339| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1049
Score = 29.5 bits (63), Expect = 1.3
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -1
Query: 419 SAVKLGPRGXPEPTSTVQVSSHALSALAPGALITPT-PFLPAES 291
+AVK G RG P+ +S+ ++ ++SA + T T P PA S
Sbjct: 652 TAVKSGTRGPPKASSSSTTTTSSISAASQATTTTHTMPLTPAAS 695
>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3486
Score = 27.9 bits (59), Expect = 4.1
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 92 CAELLNAYGIATTTKAKISKEELLMEIPNHDALVV 196
C L N Y A+T++ K SKE+++ ++ +VV
Sbjct: 3040 CQTLNNTYSPASTSRVKASKEQIISANSSYAEIVV 3074
>SB_38912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 168
Score = 27.5 bits (58), Expect = 5.4
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 106 QRLRNRHHYQGQDLQGRTSYGDTQPRRSGCAFSNSS 213
+R ++R DL +GD QPRRS F NSS
Sbjct: 87 RRTKSRSSSLKDDLSPFLVFGDWQPRRSERIFINSS 122
>SB_21917| Best HMM Match : CXC (HMM E-Value=0.22)
Length = 470
Score = 27.5 bits (58), Expect = 5.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 292 DSAGKKGVGVINAPGANALSACELTCT 372
D G+ GV V +APG C++ CT
Sbjct: 235 DEMGRAGVTVEHAPGDADYKICQMACT 261
>SB_46200| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 27.1 bits (57), Expect = 7.2
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = +1
Query: 94 CRTPQRLRNRHHYQGQDLQGRTSYGDTQPRRSGCA 198
C P+ +R+ G+ Y ++ PR GCA
Sbjct: 5 CYLPREIRSSSPSPGRSANPHCRYNESNPRTQGCA 39
>SB_25387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 533
Score = 27.1 bits (57), Expect = 7.2
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 100 TPQRLRNRHHYQGQDLQG 153
TPQ+L HH +G D+QG
Sbjct: 254 TPQKLPFHHHNKGYDIQG 271
>SB_42589| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 183
Score = 27.1 bits (57), Expect = 7.2
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = -1
Query: 449 TEPGPNLPAFSAVKLGPRG--XPEPTSTVQVSSHALSALAPGALITPTP 309
T P P++P +SA PRG E T+ S++ S P L P P
Sbjct: 28 TAPDPDIPVYSARARSPRGQRQSENLRTIPPVSNSCSPGDPLVLERPPP 76
>SB_5193| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 672
Score = 27.1 bits (57), Expect = 7.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 377 STVQVSSHALSALAPGALITPTPFLPAESTSM 282
S+ +S H L LA G PTP +PA + S+
Sbjct: 159 SSKVLSPHELRLLAKGLKFIPTPPIPASNKSL 190
>SB_36985| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 323
Score = 26.6 bits (56), Expect = 9.5
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +1
Query: 277 DNIDVDSAGKKGVGVINAPG 336
DNID+++A ++G+ V N PG
Sbjct: 84 DNIDLEAAKRRGILVGNTPG 103
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,397,426
Number of Sequences: 59808
Number of extensions: 186099
Number of successful extensions: 584
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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