Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV1013.Seq
(449 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83219-1|CAB05694.1| 322|Caenorhabditis elegans Hypothetical pr... 63 1e-10
EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of g... 31 0.29
AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical ... 31 0.29
U80445-10|AAB37800.1| 141|Caenorhabditis elegans Hypothetical p... 29 2.1
U39999-1|AAK93855.1| 277|Caenorhabditis elegans Hypothetical pr... 28 2.7
Z46792-3|CAA86765.2| 131|Caenorhabditis elegans Hypothetical pr... 28 3.6
AY273823-1|AAQ01772.1| 1040|Caenorhabditis elegans VAB-19 protein. 27 4.8
AC006688-1|AAF39969.3| 1040|Caenorhabditis elegans Variable abno... 27 4.8
U53341-1|AAC69110.3| 727|Caenorhabditis elegans Hypothetical pr... 27 6.3
AF016418-7|AAK18898.1| 248|Caenorhabditis elegans Hypothetical ... 27 6.3
>Z83219-1|CAB05694.1| 322|Caenorhabditis elegans Hypothetical
protein C31C9.2 protein.
Length = 322
Score = 62.9 bits (146), Expect = 1e-10
Identities = 28/61 (45%), Positives = 40/61 (65%)
Frame = +2
Query: 41 MVVDIKSVLIVDGVGAKCAELLNAYGIATTTKAKISKEELLMEIPNHDALVVRSATQVTK 220
M I VLI D + +C ++L GI T K K +K+ELL+ +P HDA++VRSAT++T
Sbjct: 1 MSAPINKVLIADDIEQECVDILKQNGIEVTVKTKQTKDELLVTLPQHDAVIVRSATKITA 60
Query: 221 E 223
E
Sbjct: 61 E 61
Score = 41.9 bits (94), Expect = 2e-04
Identities = 21/52 (40%), Positives = 31/52 (59%)
Frame = +1
Query: 277 DNIDVDSAGKKGVGVINAPGANALSACELTCTVDVGSGXPRGPSFTALKAGR 432
DNIDV +A + V+N P AN+ SA ELTCT+ + + ++KAG+
Sbjct: 81 DNIDVPAASANKILVMNTPQANSRSAAELTCTLILSLSRHVPQAAASMKAGK 132
>EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of glp-1
protein.
Length = 1492
Score = 31.5 bits (68), Expect = 0.29
Identities = 20/49 (40%), Positives = 24/49 (48%)
Frame = -1
Query: 443 PGPNLPAFSAVKLGPRGXPEPTSTVQVSSHALSALAPGALITPTPFLPA 297
P P PA S + P+G P T+ SSH AP A TPTP P+
Sbjct: 1241 PAPP-PALSVFQHSPQGAPI-TAPPPASSHHEHIAAPQARFTPTPGAPS 1287
>AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical
protein Y53H1C.2a protein.
Length = 1512
Score = 31.5 bits (68), Expect = 0.29
Identities = 20/49 (40%), Positives = 24/49 (48%)
Frame = -1
Query: 443 PGPNLPAFSAVKLGPRGXPEPTSTVQVSSHALSALAPGALITPTPFLPA 297
P P PA S + P+G P T+ SSH AP A TPTP P+
Sbjct: 1261 PAPP-PALSVFQHSPQGAPI-TAPPPASSHHEHIAAPQARFTPTPGAPS 1307
>U80445-10|AAB37800.1| 141|Caenorhabditis elegans Hypothetical
protein C50F2.7 protein.
Length = 141
Score = 28.7 bits (61), Expect = 2.1
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = +1
Query: 277 DNIDVDSAGKKGVGVINAPGANALSACELTCTVDVGSGXPRGPSFTA 417
DN V S G K + + + S E+ T SG PR PSFTA
Sbjct: 56 DNSTVTSNGTKSPSSVGSSLPTSSSGPEIKTTTPK-SGKPRAPSFTA 101
>U39999-1|AAK93855.1| 277|Caenorhabditis elegans Hypothetical
protein F41G3.14 protein.
Length = 277
Score = 28.3 bits (60), Expect = 2.7
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 283 IDVDSAGKKGVGVINAPGANALSACELTCTVDVG 384
+DV+S KK ++ +P A+S C TC+V VG
Sbjct: 203 VDVNS-DKKSEVLLLSPTLEAISVCRATCSVIVG 235
>Z46792-3|CAA86765.2| 131|Caenorhabditis elegans Hypothetical
protein C52A11.3 protein.
Length = 131
Score = 27.9 bits (59), Expect = 3.6
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -1
Query: 413 VKLGPRGXPEPTSTVQVSSHALSALAPGAL 324
+K+ R P P ST+ +SS+ S+LA G +
Sbjct: 10 IKIHRRQPPSPPSTITLSSYEYSSLAVGII 39
>AY273823-1|AAQ01772.1| 1040|Caenorhabditis elegans VAB-19 protein.
Length = 1040
Score = 27.5 bits (58), Expect = 4.8
Identities = 20/50 (40%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Frame = -1
Query: 449 TEPGPNLPA--FSAVKLGPRGXPEPTSTVQVSSHALS-ALAPGALITPTP 309
T P P PA F VK G P PT VQ S A++ G L P P
Sbjct: 363 TSPPPQAPASAFEPVKPLSNGSPSPTHQVQKPIVTRSIAVSTGPLPAPKP 412
>AC006688-1|AAF39969.3| 1040|Caenorhabditis elegans Variable
abnormal morphology protein19 protein.
Length = 1040
Score = 27.5 bits (58), Expect = 4.8
Identities = 20/50 (40%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Frame = -1
Query: 449 TEPGPNLPA--FSAVKLGPRGXPEPTSTVQVSSHALS-ALAPGALITPTP 309
T P P PA F VK G P PT VQ S A++ G L P P
Sbjct: 363 TSPPPQAPASAFEPVKPLSNGSPSPTHQVQKPIVTRSIAVSTGPLPAPKP 412
>U53341-1|AAC69110.3| 727|Caenorhabditis elegans Hypothetical
protein F49E10.5 protein.
Length = 727
Score = 27.1 bits (57), Expect = 6.3
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 277 DNIDVDSAGKKGVGVINAPG 336
DNIDV +A + G+ V +APG
Sbjct: 254 DNIDVKAATELGIAVCHAPG 273
>AF016418-7|AAK18898.1| 248|Caenorhabditis elegans Hypothetical
protein C49G7.3 protein.
Length = 248
Score = 27.1 bits (57), Expect = 6.3
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +1
Query: 328 APGANALSACELTCTVDVGSGXPRGPSFTA 417
AP ANA+ + EL CT G+ PS TA
Sbjct: 13 APQANAVISGELNCTTYNGTAFVYSPSATA 42
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,178,677
Number of Sequences: 27780
Number of extensions: 137134
Number of successful extensions: 449
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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