Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1011.Seq
         (409 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    32   0.039
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po...    31   0.069
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    27   1.1  
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ...    26   2.0  
SPCC1183.03c |||frataxin homolog|Schizosaccharomyces pombe|chr 3...    25   3.4  
SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein 3...    25   3.4  
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    25   4.5  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.0  
SPAC20G4.04c |hus1||checkpoint clamp complex protein Hus1|Schizo...    24   7.9  
SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid transporter|Schizo...    24   7.9  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    24   7.9  

>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 31.9 bits (69), Expect = 0.039
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = +3

Query: 126 NKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVAN 242
           N   D   KFP  K+P F   DG   L+E+ AIA+Y+A+
Sbjct: 38  NFPADLAAKFPLQKMPVFVGKDG-FPLSETLAIAFYLAS 75


>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 220

 Score = 31.1 bits (67), Expect = 0.069
 Identities = 25/76 (32%), Positives = 32/76 (42%)
 Frame = +3

Query: 6   MAAGVLYTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFES 185
           M  G LY++  N R    L  A+     V +   +       S D   KFP  K+P F  
Sbjct: 1   MFLGTLYSFKTNTRTVCLLELAKLLDLQVDLVETYPH---KFSADLAAKFPLQKLPVFIG 57

Query: 186 ADGKVLLTESNAIAYY 233
           ADG   L+E  AI  Y
Sbjct: 58  ADG-FELSEVIAIVKY 72


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = +3

Query: 33  PENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTE 212
           P  F++ KA +  QY+          +FG  +K ++F K+    ++  F S +  +L+  
Sbjct: 553 PNYFKSLKAELNRQYAAAVNSGTRPLLFGSLSKYQNFTKEKLESEIVRF-SFEHSILINT 611

Query: 213 SN 218
           SN
Sbjct: 612 SN 613


>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 202 STFPSALSNAGTFPAGNFFKKSSDL 128
           +TFP A +  GTFP G  F   S L
Sbjct: 52  ATFPWAQAPVGTFPIGQLFDPVSGL 76


>SPCC1183.03c |||frataxin homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 158

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +3

Query: 186 ADGKVLLTESNAIAYYVANESLRVEIWLPKPVSGXGH 296
           A+G + L       Y +  +    +IWL  PVSG  H
Sbjct: 79  ANGVITLMLGEKGTYVINKQPPAHQIWLSSPVSGPKH 115


>SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 8/27 (29%), Positives = 19/27 (70%)
 Frame = -2

Query: 246 FHWQRSKRWHCFQLGAPFHRHFRMQAL 166
           FH   ++ +HC+++G P ++++  +AL
Sbjct: 363 FHHDYTE-YHCYRIGKPLYQNYEEEAL 388


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +3

Query: 9   AAGVLYTYPENFRAYKALIAAQYSG-TDVKVAPNFV-FGE 122
           A G +YT  E+FRA K+L     S  T V+    FV FGE
Sbjct: 329 ALGSVYTIQESFRAEKSLTRRHLSEFTHVEFELPFVNFGE 368


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 207 TESNAIAYYVANESLRVEIWLPK 275
           +ES  I YY  N     E+WLP+
Sbjct: 722 SESRIIVYYSNNTLYLSELWLPQ 744


>SPAC20G4.04c |hus1||checkpoint clamp complex protein
           Hus1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 70  HNIPGLM*K*HRISYLARPTSPKTS*RSFLPE 165
           HNIP  +     +S +  PT+P+     FLP+
Sbjct: 125 HNIPVRVLSQSYVSVIKEPTAPEPDCHIFLPQ 156


>SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 93  KVAPNFVFGETNKSEDFLK 149
           K+ P+  F E + SEDFLK
Sbjct: 52  KLRPDNEFAEVHNSEDFLK 70


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = -2

Query: 210  QLGAPFHRHFRMQALFRQETSSRSLRTCWSRQIRNSVLLSHQSRNIVRRSTLYKRGSFPD 31
            Q G+P  R  +M+AL R    + S+   +    RNSVL +   +  ++     K G   +
Sbjct: 1418 QPGSPSKRSGKMEALIRNFDQNSSIPDPFIVNQRNSVLQTEFEKINLKLKEATKSGILDN 1477

Query: 30   K 28
            K
Sbjct: 1478 K 1478


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,613,312
Number of Sequences: 5004
Number of extensions: 30213
Number of successful extensions: 89
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)