Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV1011.Seq
(409 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671... 79 1e-15
06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899... 71 3e-13
05_01_0350 + 2736096-2736242,2736460-2736508,2736704-2737046,274... 41 4e-04
01_04_0025 - 15199036-15199493,15199633-15199681,15199782-15199931 40 0.001
01_04_0035 + 15326445-15326594,15326707-15326755,15326853-15327319 38 0.004
01_04_0032 + 15273716-15273865,15274658-15274706,15275737-15276188 38 0.004
03_01_0249 - 1935355-1935827,1936129-1936330 32 0.15
02_04_0267 - 21430370-21430474,21430559-21430618,21430937-214310... 32 0.15
01_04_0031 + 15271193-15271342,15272134-15272182,15272894-15273294 30 0.62
05_01_0123 - 846081-846167,846264-846404,846749-846866,847382-84... 29 1.9
02_03_0193 + 16211395-16212729,16212894-16213401,16213712-16214112 29 1.9
01_01_0735 + 5730783-5733320 29 1.9
04_01_0041 - 464695-464850,467485-469029 27 4.3
>02_02_0095 +
6716327-6716335,6717302-6717451,6717523-6717583,
6717646-6717725,6717802-6717903,6717982-6718471,
6718796-6719171,6720320-6720379,6720887-6721056,
6721287-6721340,6721384-6721523,6722362-6722511,
6722582-6722642,6722705-6722784,6722933-6723034,
6723111-6723612,6724401-6724776,6725419-6725493,
6726058-6726198,6726264-6726282
Length = 1065
Score = 79.4 bits (187), Expect = 1e-15
Identities = 41/77 (53%), Positives = 53/77 (68%)
Frame = +3
Query: 18 VLYTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGK 197
VL+T+ N A+KALIAA+YSG V++A NF G +NK+ ++LK P GKVP E+ DG
Sbjct: 565 VLHTFDGNKNAFKALIAAEYSGVKVELAKNFQMGVSNKTPEYLKMNPIGKVPILETPDGP 624
Query: 198 VLLTESNAIAYYVANES 248
V ESNAIA YV + S
Sbjct: 625 VF--ESNAIARYVLSSS 639
Score = 72.9 bits (171), Expect = 9e-14
Identities = 38/73 (52%), Positives = 48/73 (65%)
Frame = +3
Query: 18 VLYTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGK 197
VL+ N A+KALIAA+YSG V++ NF G +NK+ +FLK P GK+P E+ DG
Sbjct: 4 VLHAGSGNKNAFKALIAAEYSGVKVELVKNFQMGVSNKTPEFLKMNPIGKIPVLETPDGP 63
Query: 198 VLLTESNAIAYYV 236
V ESNAIA YV
Sbjct: 64 VF--ESNAIARYV 74
>06_03_0529 -
21788132-21788395,21788414-21788511,21789458-21789953,
21790033-21790134,21790218-21790270,21790354-21790414,
21790491-21790640,21791298-21791350,21794125-21794152
Length = 434
Score = 71.3 bits (167), Expect = 3e-13
Identities = 37/74 (50%), Positives = 49/74 (66%)
Frame = +3
Query: 18 VLYTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGK 197
VL+ N A+KALIAA+Y+G V++ NF G +NK+ +FLK P GK+P E+ +G
Sbjct: 28 VLHCGSGNKNAFKALIAAEYTGVKVELTKNFEMGVSNKTPEFLKMNPLGKIPVLETPEGA 87
Query: 198 VLLTESNAIAYYVA 239
V ESNAIA YVA
Sbjct: 88 VF--ESNAIARYVA 99
>05_01_0350 +
2736096-2736242,2736460-2736508,2736704-2737046,
2743911-2744499
Length = 375
Score = 40.7 bits (91), Expect = 4e-04
Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = +3
Query: 60 LIAAQYSGTDVK-VAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYV 236
L+ + +G + VA + GE N+S L + P GK+PAFE DG+V L ES AI YV
Sbjct: 18 LVCLEEAGASYELVAVDMAAGE-NRSRHHLARSPFGKIPAFE--DGEVTLFESRAIQRYV 74
>01_04_0025 - 15199036-15199493,15199633-15199681,15199782-15199931
Length = 218
Score = 39.5 bits (88), Expect = 0.001
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Frame = +3
Query: 54 KALIAAQYSGTDVK-VAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAY 230
+ L+ + G D + V +F+ GE N S + +++ P GK+PA + DG ++L ES AIA
Sbjct: 17 RVLVCLEEVGADYELVTVDFLAGEQN-SPEHVERNPFGKIPALQ--DGDLVLFESRAIAK 73
Query: 231 YV 236
Y+
Sbjct: 74 YI 75
>01_04_0035 + 15326445-15326594,15326707-15326755,15326853-15327319
Length = 221
Score = 37.5 bits (83), Expect = 0.004
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Frame = +3
Query: 54 KALIAAQYSGTDVKVAPNFVFGET-NKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAY 230
+ L+ + G D ++ + FG+ +K D L + P G+VPAF+ DG ++L ES AI
Sbjct: 17 RVLLCLEEVGADYEIV-DVDFGDREHKGPDHLARNPFGQVPAFQ--DGDLMLFESRAICR 73
Query: 231 YV 236
Y+
Sbjct: 74 YI 75
>01_04_0032 + 15273716-15273865,15274658-15274706,15275737-15276188
Length = 216
Score = 37.5 bits (83), Expect = 0.004
Identities = 23/77 (29%), Positives = 38/77 (49%)
Frame = +3
Query: 6 MAAGVLYTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFES 185
MA +Y + + L+ + G + +V P + +K + + P G+VPAFE
Sbjct: 1 MAPAKVYGPAMSTNVMRILVCLEEVGAEYEVVPVDMSTGEHKRPPHISRNPFGQVPAFE- 59
Query: 186 ADGKVLLTESNAIAYYV 236
DG + L ES AI+ Y+
Sbjct: 60 -DGDLTLFESRAISKYI 75
>03_01_0249 - 1935355-1935827,1936129-1936330
Length = 224
Score = 32.3 bits (70), Expect = 0.15
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +3
Query: 126 NKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVANE 245
+KS FLK P G+VPAF+ D + ES AI Y+ ++
Sbjct: 42 HKSPSFLKLQPFGQVPAFK--DSLTTVFESRAICRYICDQ 79
>02_04_0267 -
21430370-21430474,21430559-21430618,21430937-21431046,
21431220-21431295,21431541-21431594,21431935-21432006,
21432088-21432173,21432694-21432750,21432886-21432991
Length = 241
Score = 32.3 bits (70), Expect = 0.15
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = +3
Query: 21 LYTYPENFRAYKALIAAQYSGTDVKV-APNFVFGETNKSEDFLKKFPAGKVPAFESADGK 197
LY+Y + +++ IA G + + A N + GE + E F+K P VPA DG
Sbjct: 16 LYSYWRSSCSHRVRIALNLKGLEYEYKAVNLLKGEHSDPE-FMKVNPMKFVPAL--VDGD 72
Query: 198 VLLTESNAIAYYVANE 245
++ +S AIA Y+ ++
Sbjct: 73 AVIGDSYAIALYLEDK 88
>01_04_0031 + 15271193-15271342,15272134-15272182,15272894-15273294
Length = 199
Score = 30.3 bits (65), Expect = 0.62
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = +3
Query: 54 KALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKV--LLTESNAIA 227
+ L+ + G + ++ + KS L + P G+VPAF+ D + LL ESN
Sbjct: 17 RVLVCLEEVGAEYELVGIHIPAGEQKSPAHLARNPFGQVPAFQDGDLILFDLLKESN--- 73
Query: 228 YYVANESLRVEIWL 269
++ ++ V++WL
Sbjct: 74 --LSQSAIMVDVWL 85
>05_01_0123 -
846081-846167,846264-846404,846749-846866,847382-847528,
848439-848441,848590-848627,848808-848851,848959-849016
Length = 211
Score = 28.7 bits (61), Expect = 1.9
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = +3
Query: 141 FLKKFPAGKVPAFESADGK 197
FLK P GKVP F DGK
Sbjct: 49 FLKISPEGKVPVFNGGDGK 67
>02_03_0193 + 16211395-16212729,16212894-16213401,16213712-16214112
Length = 747
Score = 28.7 bits (61), Expect = 1.9
Identities = 14/72 (19%), Positives = 32/72 (44%)
Frame = -2
Query: 285 QTRAWVARSPXGDFHWQRSKRWHCFQLGAPFHRHFRMQALFRQETSSRSLRTCWSRQIRN 106
Q +W ++ + +W + +GAP ++ F Q + +Q+ + + QI
Sbjct: 468 QAMSWCRFKLSANYFLSKPYQWRKYIVGAPAYQGFHFQGMIKQQIDGVDMMLLYYHQI-- 525
Query: 105 SVLLSHQSRNIV 70
S++ S ++V
Sbjct: 526 SIVYCSVSEDVV 537
>01_01_0735 + 5730783-5733320
Length = 845
Score = 28.7 bits (61), Expect = 1.9
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 101 TEFRIWRDQQVRRLLEEVSCRKSACIRKCRWKGA 202
T F +W D + + +E SC+K C+ C K A
Sbjct: 372 TYFHLWGDSRGAPMTDEESCKKD-CLSNCSCKAA 404
>04_01_0041 - 464695-464850,467485-469029
Length = 566
Score = 27.5 bits (58), Expect = 4.3
Identities = 14/72 (19%), Positives = 31/72 (43%)
Frame = -2
Query: 285 QTRAWVARSPXGDFHWQRSKRWHCFQLGAPFHRHFRMQALFRQETSSRSLRTCWSRQIRN 106
Q R+W ++ + +W + + AP ++ F Q + +Q+ + QI
Sbjct: 232 QVRSWCRFKFSANYFLSKPYQWRKYMVDAPTYQGFHFQGMIKQQIDGVDKMLLYYHQI-- 289
Query: 105 SVLLSHQSRNIV 70
S++ S ++V
Sbjct: 290 SIVYCSVSEDVV 301
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,007,646
Number of Sequences: 37544
Number of extensions: 212808
Number of successful extensions: 552
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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