Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1011.Seq
         (409 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07)                 87   7e-18
SB_7437| Best HMM Match : PAS (HMM E-Value=7.2e-14)                    32   0.21 
SB_51364| Best HMM Match : DUF1431 (HMM E-Value=5.9)                   29   1.9  
SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_53789| Best HMM Match : ResIII (HMM E-Value=0.044)                  27   4.5  
SB_54545| Best HMM Match : TIP49 (HMM E-Value=4.3)                     27   5.9  

>SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07)
          Length = 203

 Score = 86.6 bits (205), Expect = 7e-18
 Identities = 42/77 (54%), Positives = 52/77 (67%)
 Frame = +3

Query: 6   MAAGVLYTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFES 185
           MAAG LYTYP++FRA K LIAA+YSGT ++V P F FG+ N + +FLKKFP GKVPAFE+
Sbjct: 1   MAAGKLYTYPDSFRAQKILIAAEYSGTKIEV-PAFTFGKDNHTAEFLKKFPLGKVPAFET 59

Query: 186 ADGKVLLTESNAIAYYV 236
                       +  YV
Sbjct: 60  KTANACTRAMPLLTTYV 76


>SB_7437| Best HMM Match : PAS (HMM E-Value=7.2e-14)
          Length = 505

 Score = 31.9 bits (69), Expect = 0.21
 Identities = 19/76 (25%), Positives = 33/76 (43%)
 Frame = +3

Query: 39  NFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTESN 218
           N   +K +   Q   +  K+ P  V GE N   + +KK     +P      GK +  + +
Sbjct: 105 NIGKFKMVWIDQIDESTKKLKPKMVAGEDNGFVNAIKKVSLEDIPEGNGPSGKAIREKRS 164

Query: 219 AIAYYVANESLRVEIW 266
            I   + N+SL + +W
Sbjct: 165 IIVNDIENDSL-MNLW 179


>SB_51364| Best HMM Match : DUF1431 (HMM E-Value=5.9)
          Length = 364

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -2

Query: 168 LFRQETSSRSLRTCWSRQIRNSVLLSHQSRNIVRRSTLYK 49
           +FR +  + +     S ++ N V +SHQSR IV   T+ K
Sbjct: 102 VFRSKQQAPNKAVGRSDEVTNEVAVSHQSRRIVESETVRK 141


>SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4554

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
 Frame = +3

Query: 99   APNFVFGET---NKSEDFLKKFPAGKVPAFE---SADGKVL-LTESNAIAYYVANESLRV 257
            +PN +F      + +E +L  F +G   + E   SA+G++  L     +A  ++++  R 
Sbjct: 1798 SPNKMFNTAAPQSSNEVWLTSFCSGHSLSVELAASAEGQLNGLVSQAGVASLLSSQGFRE 1857

Query: 258  EIWLPKPVSGXGHXGL 305
             +W P+PVSG     L
Sbjct: 1858 GLWKPEPVSGEAFSSL 1873


>SB_53789| Best HMM Match : ResIII (HMM E-Value=0.044)
          Length = 942

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -2

Query: 228 KRWHCFQ-LGAPFHRHFRMQALFRQETSSRSL-RTCWSRQIR 109
           K W+  + LGA  H H  M+A  R +   RSL R C+  +IR
Sbjct: 487 KVWNSKETLGAQPHAHIDMRAAMRGQCLRRSLGRHCFGTEIR 528


>SB_54545| Best HMM Match : TIP49 (HMM E-Value=4.3)
          Length = 516

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 72  QYSGTDVKVAPNFVFGETNKSEDFLK-KFPAGKVP 173
           QY+ T +++  +FVF +T+     LK KF   ++P
Sbjct: 49  QYTKTGIRLCQSFVFNKTSSENVLLKTKFWESRIP 83


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,442,551
Number of Sequences: 59808
Number of extensions: 243098
Number of successful extensions: 491
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)