Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV1011.Seq
(409 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024200-13|AAF36004.1| 214|Caenorhabditis elegans Glutathione ... 40 7e-04
Z72507-15|CAJ55245.1| 365|Caenorhabditis elegans Hypothetical p... 37 0.006
Z72507-6|CAA96631.1| 398|Caenorhabditis elegans Hypothetical pr... 37 0.006
U42833-6|AAA83581.1| 1650|Caenorhabditis elegans Hypothetical pr... 31 0.32
AF025462-3|AAB71002.1| 309|Caenorhabditis elegans Hypothetical ... 30 0.56
Z68012-5|CAA92019.1| 408|Caenorhabditis elegans Hypothetical pr... 30 0.74
Z93377-6|CAB07572.2| 254|Caenorhabditis elegans Hypothetical pr... 29 1.3
Z67756-1|CAA91762.1| 157|Caenorhabditis elegans Hypothetical pr... 29 1.7
L16622-3|ABC71837.1| 254|Caenorhabditis elegans Hypothetical pr... 28 2.3
L16622-1|ABB51198.1| 537|Caenorhabditis elegans Hypothetical pr... 28 2.3
AF016448-13|AAB65963.1| 239|Caenorhabditis elegans Hypothetical... 28 3.0
U53332-10|AAK31530.1| 136|Caenorhabditis elegans Frataxin (invo... 27 3.9
AY048153-1|AAL05950.1| 136|Caenorhabditis elegans frataxin prot... 27 3.9
Z66516-7|CAA91362.2| 494|Caenorhabditis elegans Hypothetical pr... 27 5.2
U81043-1|AAC47486.1| 494|Caenorhabditis elegans MEX-1 protein. 27 5.2
AL023828-30|CAA19470.2| 494|Caenorhabditis elegans Hypothetical... 27 5.2
U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of pr... 27 6.9
U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion... 27 6.9
U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion... 27 6.9
AC025716-22|AAK39613.1| 630|Caenorhabditis elegans Zwilch (dros... 26 9.1
>AC024200-13|AAF36004.1| 214|Caenorhabditis elegans Glutathione
s-transferase protein43 protein.
Length = 214
Score = 39.9 bits (89), Expect = 7e-04
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Frame = +3
Query: 6 MAAGVLYTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSE-DFLKKFPAGKVPAFE 182
MA +LY+Y + A++ IA D + P +F E +K+ +F+K PA KVP
Sbjct: 1 MAKPILYSYWRSSCAWRVRIALALKNIDYEYRPIDLFSEESKNNAEFVKHNPAKKVPTL- 59
Query: 183 SADGKVLLTESNAIAYYVANESLRVEIWLPK 275
+ LTES AI Y+ +E+ +LPK
Sbjct: 60 -VINGLSLTESLAIIEYL-DEAYPDPPFLPK 88
>Z72507-15|CAJ55245.1| 365|Caenorhabditis elegans Hypothetical
protein F17C11.9c protein.
Length = 365
Score = 36.7 bits (81), Expect = 0.006
Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Frame = +3
Query: 15 GVLYTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADG 194
G LY +NFR K LIAA+ + V +A G+ ++ KFP G PAFE G
Sbjct: 3 GKLYGNKDNFRTQKVLIAAKLANKTVTLA-----GDAAPAD----KFPLGVTPAFE---G 50
Query: 195 KVLLTESNAIAYYVANESLRVEI--WL 269
LL + +I ++ S E WL
Sbjct: 51 DALLFGAESIGLHLTGTSANAETVQWL 77
>Z72507-6|CAA96631.1| 398|Caenorhabditis elegans Hypothetical
protein F17C11.9a protein.
Length = 398
Score = 36.7 bits (81), Expect = 0.006
Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Frame = +3
Query: 15 GVLYTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADG 194
G LY +NFR K LIAA+ + V +A G+ ++ KFP G PAFE G
Sbjct: 3 GKLYGNKDNFRTQKVLIAAKLANKTVTLA-----GDAAPAD----KFPLGVTPAFE---G 50
Query: 195 KVLLTESNAIAYYVANESLRVEI--WL 269
LL + +I ++ S E WL
Sbjct: 51 DALLFGAESIGLHLTGTSANAETVQWL 77
>U42833-6|AAA83581.1| 1650|Caenorhabditis elegans Hypothetical
protein ZK430.1 protein.
Length = 1650
Score = 31.1 bits (67), Expect = 0.32
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -2
Query: 249 DFHWQRSKRWHCFQLGAPFHRHFRMQALFRQETSSR-SLRTCWSRQIRNSV 100
DF W+RSK W Q ++ R SS+ S+ TC + IR++V
Sbjct: 153 DFDWKRSKEWQFMQQFTKTETPIPFTSIARATLSSKHSIITCITDHIRHAV 203
>AF025462-3|AAB71002.1| 309|Caenorhabditis elegans Hypothetical
protein K10F12.4a protein.
Length = 309
Score = 30.3 bits (65), Expect = 0.56
Identities = 23/72 (31%), Positives = 34/72 (47%)
Frame = +3
Query: 141 FLKKFPAGKVPAFESADGKVLLTESNAIAYYVANESLRVEIWLPKPVSGXGHXGLTANYX 320
+L K P G+VPA E +GKV + ESN I Y+ +E LP+ H +
Sbjct: 138 YLPKSPIGRVPALE-INGKV-VWESNVIVEYL-DELFPTNTILPRDAYEKAHQKILVE-R 193
Query: 321 LLPALGSXLPWY 356
L P + + +Y
Sbjct: 194 LSPIMNALFEFY 205
>Z68012-5|CAA92019.1| 408|Caenorhabditis elegans Hypothetical
protein T24D5.5 protein.
Length = 408
Score = 29.9 bits (64), Expect = 0.74
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -2
Query: 240 WQRSKRWHCFQLGAPFHRHFRMQALFRQETSSRSLRTCWSRQIRNSV 100
W+R +R H ++G+ RHF+ + + SL CW R + V
Sbjct: 304 WKRYQRKH--KMGSEETRHFKGSSSLSNMNAQSSLMVCWKRSTDDRV 348
>Z93377-6|CAB07572.2| 254|Caenorhabditis elegans Hypothetical
protein F13A7.10 protein.
Length = 254
Score = 29.1 bits (62), Expect = 1.3
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Frame = +3
Query: 33 PENFRAYKALI--AAQYS--GTDVKVAPNFVFGET--NKSEDFLKKFPAGKVPAFESADG 194
P FR Y AAQ + VK P+ V K + + K G+VP E A+G
Sbjct: 24 PNTFRIYSMRFCPAAQRALIYASVKKIPSEVININLQQKPDWYFTKNYKGQVPTLEHAEG 83
Query: 195 KVLLTESNAIAYYV 236
K L+ ES I Y+
Sbjct: 84 KKLVIESAVIPEYL 97
>Z67756-1|CAA91762.1| 157|Caenorhabditis elegans Hypothetical
protein R07A4.2 protein.
Length = 157
Score = 28.7 bits (61), Expect = 1.7
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = -3
Query: 155 KLLQEVFGLVGLAKYEIRCYFHISPGILCGDQRFISAEVFRISV 24
K+LQ +FG + L+ CY + + CG++ F S++VF++ V
Sbjct: 22 KILQLIFGFINLSA-NYWCYPN-QHFLYCGERYFTSSQVFQLIV 63
>L16622-3|ABC71837.1| 254|Caenorhabditis elegans Hypothetical
protein C02D5.3c protein.
Length = 254
Score = 28.3 bits (60), Expect = 2.3
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 129 KSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYV 236
K + F K G+VPA E +GK ++ ES I Y+
Sbjct: 62 KPDWFFTKHYKGQVPALEHDEGKKIVIESAVIPEYL 97
>L16622-1|ABB51198.1| 537|Caenorhabditis elegans Hypothetical
protein C02D5.3a protein.
Length = 537
Score = 28.3 bits (60), Expect = 2.3
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 129 KSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYV 236
K + F K G+VPA E +GK ++ ES I Y+
Sbjct: 345 KPDWFFTKHYKGQVPALEHDEGKKIVIESAVIPEYL 380
>AF016448-13|AAB65963.1| 239|Caenorhabditis elegans Hypothetical
protein F41E6.1 protein.
Length = 239
Score = 27.9 bits (59), Expect = 3.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 156 ETSSRSLRTCWSRQIRNSVLLSHQSRNIVR 67
ET +R CWSR N+V R++VR
Sbjct: 167 ETGGAIVRDCWSRVFSNAVKNPRARRDVVR 196
>U53332-10|AAK31530.1| 136|Caenorhabditis elegans Frataxin
(involved in human friedrich'sataxia) homolog protein 1
protein.
Length = 136
Score = 27.5 bits (58), Expect = 3.9
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 153 FPAGKVPAFESADGKVLLTESNAIAYYVAN-ESLRVEIWLPKPVSG 287
FP + A G + + S ++ YV N +S +IWL P+SG
Sbjct: 47 FPVSEQFDVSHAMGVLTVNVSKSVGTYVINKQSPNKQIWLSSPMSG 92
>AY048153-1|AAL05950.1| 136|Caenorhabditis elegans frataxin
protein.
Length = 136
Score = 27.5 bits (58), Expect = 3.9
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 153 FPAGKVPAFESADGKVLLTESNAIAYYVAN-ESLRVEIWLPKPVSG 287
FP + A G + + S ++ YV N +S +IWL P+SG
Sbjct: 47 FPVSEQFDVSHAMGVLTVNVSKSVGTYVINKQSPNKQIWLSSPMSG 92
>Z66516-7|CAA91362.2| 494|Caenorhabditis elegans Hypothetical
protein W03C9.7 protein.
Length = 494
Score = 27.1 bits (57), Expect = 5.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 3 TMAAGVLYTYPENFRAYKALIAA 71
+MA+G ++ PEN R Y A+I A
Sbjct: 369 SMASGKMFGKPENIRTYGAMIRA 391
>U81043-1|AAC47486.1| 494|Caenorhabditis elegans MEX-1 protein.
Length = 494
Score = 27.1 bits (57), Expect = 5.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 3 TMAAGVLYTYPENFRAYKALIAA 71
+MA+G ++ PEN R Y A+I A
Sbjct: 369 SMASGKMFGKPENIRTYGAMIRA 391
>AL023828-30|CAA19470.2| 494|Caenorhabditis elegans Hypothetical
protein W03C9.7 protein.
Length = 494
Score = 27.1 bits (57), Expect = 5.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 3 TMAAGVLYTYPENFRAYKALIAA 71
+MA+G ++ PEN R Y A+I A
Sbjct: 369 SMASGKMFGKPENIRTYGAMIRA 391
>U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of
presynaptic activity protein.
Length = 1409
Score = 26.6 bits (56), Expect = 6.9
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +3
Query: 99 APNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVANE---SLRVEIW 266
+P+F+ +++ LK P +P + KVL T + + +Y+ E +++ +IW
Sbjct: 1029 SPSFLADADEQTKPLLKPAPPTTLPVGKQEPCKVLPTPNEPVRHYIYQELILAVQHQIW 1087
>U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion
defective protein3, isoform b protein.
Length = 1408
Score = 26.6 bits (56), Expect = 6.9
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +3
Query: 99 APNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVANE---SLRVEIW 266
+P+F+ +++ LK P +P + KVL T + + +Y+ E +++ +IW
Sbjct: 1029 SPSFLADADEQTKPLLKPAPPTTLPVGKQEPCKVLPTPNEPVRHYIYQELILAVQHQIW 1087
>U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion
defective protein3, isoform a protein.
Length = 1409
Score = 26.6 bits (56), Expect = 6.9
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +3
Query: 99 APNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVANE---SLRVEIW 266
+P+F+ +++ LK P +P + KVL T + + +Y+ E +++ +IW
Sbjct: 1029 SPSFLADADEQTKPLLKPAPPTTLPVGKQEPCKVLPTPNEPVRHYIYQELILAVQHQIW 1087
>AC025716-22|AAK39613.1| 630|Caenorhabditis elegans Zwilch
(drosophila) homolog protein1 protein.
Length = 630
Score = 26.2 bits (55), Expect = 9.1
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +1
Query: 220 PSLTTLPMKVSXWRSGYPSPC-LAXG 294
PS++TLP+ +S S +PS C LA G
Sbjct: 166 PSISTLPVWISTTSSKFPSICWLAAG 191
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,110,412
Number of Sequences: 27780
Number of extensions: 173842
Number of successful extensions: 425
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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