Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1011.Seq
         (409 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.0  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   2.3  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   4.1  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 21   LYTYPENFRAYKALIAAQYSGTDVKVA 101
            L+  PE+F A  ALI+ Q  G  + VA
Sbjct: 1616 LFRKPEHFVASYALISNQCEGDSLNVA 1642


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +2

Query: 107 FRIWRDQQVRRLLEEVSCRKSACIRKCRWKG 199
           F IWRD    ++ E  +   +A   +  W G
Sbjct: 32  FEIWRDSLPTKMRELNATACAALYERVEWSG 62


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 10/45 (22%), Positives = 17/45 (37%)
 Frame = +2

Query: 215 QCHRLLRCQ*KSPXGDLATQARVWQXASWSDSELLXASCXRVXPT 349
           +C    +C+  +P G +  +          D  LL   C  + PT
Sbjct: 61  KCEIYAKCEFLNPGGSVKDRIAYRMIQDAEDKGLLKPGCTIIEPT 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,843
Number of Sequences: 438
Number of extensions: 2317
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)