Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1010.Seq
         (369 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P07856 Cluster: Sericin 1 precursor; n=4; Bombyx mori|R...    54   8e-07
UniRef50_Q7RCG7 Cluster: Putative uncharacterized protein PY0581...    31   5.1  
UniRef50_Q99GT5 Cluster: ORF131; n=3; Nucleopolyhedrovirus|Rep: ...    31   6.7  
UniRef50_Q54RU1 Cluster: ABC transporter B family protein; n=1; ...    31   8.9  

>UniRef50_P07856 Cluster: Sericin 1 precursor; n=4; Bombyx mori|Rep:
            Sericin 1 precursor - Bombyx mori (Silk moth)
          Length = 1186

 Score = 54.0 bits (124), Expect = 8e-07
 Identities = 22/22 (100%), Positives = 22/22 (100%)
 Frame = -1

Query: 258  KICLCFENIFDIPYHLRKNIGV 193
            KICLCFENIFDIPYHLRKNIGV
Sbjct: 1165 KICLCFENIFDIPYHLRKNIGV 1186



 Score = 32.7 bits (71), Expect = 2.2
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = -2

Query: 293  GVNRLLHKPGQGK 255
            GVNRLLHKPGQGK
Sbjct: 1153 GVNRLLHKPGQGK 1165


>UniRef50_Q7RCG7 Cluster: Putative uncharacterized protein PY05815;
           n=3; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein PY05815 - Plasmodium yoelii yoelii
          Length = 1012

 Score = 31.5 bits (68), Expect = 5.1
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +1

Query: 61  RGFLCMLIKVKQRESYR*NRSKSLSKI*NLKHYKEYSKXCLVVLNTD-ILTEMVRNIEYV 237
           +GF   ++  +    Y    ++ LSK  NLK+ K+Y    L++LN D  + E V++  Y 
Sbjct: 458 KGFDVSIVSAQDYMKYSGYDNELLSKYYNLKNEKDY--IFLIILNKDFFIDEFVKSQNYS 515

Query: 238 FEAKAYF 258
              + YF
Sbjct: 516 ISKQNYF 522


>UniRef50_Q99GT5 Cluster: ORF131; n=3; Nucleopolyhedrovirus|Rep:
           ORF131 - Helicoverpa zea SNPV
          Length = 192

 Score = 31.1 bits (67), Expect = 6.7
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +1

Query: 148 LKHYKEYSKXCLVVLNTDILTEMVRNIEYVFE 243
           L H +  +K  +V LN D + E V+NI++VFE
Sbjct: 149 LNHLRSINKQKIVFLNGDHVEEYVQNIKHVFE 180


>UniRef50_Q54RU1 Cluster: ABC transporter B family protein; n=1;
           Dictyostelium discoideum AX4|Rep: ABC transporter B
           family protein - Dictyostelium discoideum AX4
          Length = 678

 Score = 30.7 bits (66), Expect = 8.9
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = -3

Query: 280 FYTSLVKENMPLLRKHIRYSLPSP*EYRCLIQLNTXWSIPCSV*DFKSYLMTSNDFNDN 104
           F++ L+  ++PL+ K+I  +LP   E+  LI     + I  S+ D +  L    D ND+
Sbjct: 103 FFSKLINLSVPLIFKNIINTLPEKVEWHLLILYGVLFLIQKSIWDIRDLLF--QDVNDS 159


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 316,282,091
Number of Sequences: 1657284
Number of extensions: 5220124
Number of successful extensions: 8614
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8613
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 13647406432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)