Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1010.Seq
         (369 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      27   1.2  
SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr ...    24   6.5  
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    24   8.6  

>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -3

Query: 277 YTSLVKENMPLLRKHIRYSLPSP*EYRCLIQLNTXWSIPCSV*DFKSY 134
           Y+S+   ++P +  ++ Y+   P  Y C I  N+   +P S  DF ++
Sbjct: 441 YSSIYSNDVPAIPPNVPYTFVDPYTYACYINNNSY--LPPSYMDFYTW 486


>SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 429

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -3

Query: 310 PXVIIQA*TDFYTSLVKENMPLLRKHIRYSLPS 212
           P   ++   DF     +E+ P++ KHI   +P+
Sbjct: 211 PHAYVEPAADFIDFFSREDWPIISKHISLIVPT 243


>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -3

Query: 202 YRCLIQLNTXWSIPCSV*DFKSYLMTSNDFNDNF 101
           +RC        SIPC++        + ND+N NF
Sbjct: 85  FRCDCGTTRTHSIPCNLRKSVDECGSENDYNHNF 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,380,717
Number of Sequences: 5004
Number of extensions: 24923
Number of successful extensions: 42
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)