Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1010.Seq
         (369 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16055| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.1  
SB_42335| Best HMM Match : Hint (HMM E-Value=1.4013e-45)               26   8.3  
SB_177| Best HMM Match : SBP_bac_3 (HMM E-Value=0.032)                 26   8.3  

>SB_16055| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 848

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -3

Query: 295 QA*TDFYTSLVKENMPLLRKHIRYSLPSP*EYRCLIQLNTXWSIPCSV 152
           Q+   +Y   VKE +     H+ +    P   RC I+LN  WS PC V
Sbjct: 738 QSQKSYYDCWVKEKIFKKGDHVLWFDKKPRRGRC-IKLNRPWSGPCIV 784


>SB_42335| Best HMM Match : Hint (HMM E-Value=1.4013e-45)
          Length = 825

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 159 QGILQXVFSCIKHRYSYGDGKEYRICFR 242
           Q I +  F+CIKH +   D +   +C R
Sbjct: 236 QAIRRYSFTCIKHSFQLSDDRFSELCTR 263


>SB_177| Best HMM Match : SBP_bac_3 (HMM E-Value=0.032)
          Length = 619

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -3

Query: 130 MTSNDFNDNFLFV*L*SAYIKSPGFVPGR 44
           ++ ++FND+F ++   SA I  PG +P R
Sbjct: 113 LSLHNFNDDFTWIFTESAMITDPGGLPNR 141


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,998,097
Number of Sequences: 59808
Number of extensions: 170732
Number of successful extensions: 226
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 594991920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)