Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1010.Seq
         (369 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022971-13|AAG23979.1|  325|Caenorhabditis elegans Serpentine r...    28   1.8  
Z77133-3|CAB00868.2|  149|Caenorhabditis elegans Hypothetical pr...    28   2.4  
U80028-2|AAN73869.1|  351|Caenorhabditis elegans Serpentine rece...    26   7.3  
Z35663-14|CAA84733.1|  805|Caenorhabditis elegans Hypothetical p...    26   9.7  
AC006680-2|AAK72302.1|  309|Caenorhabditis elegans Serpentine re...    26   9.7  

>AF022971-13|AAG23979.1|  325|Caenorhabditis elegans Serpentine
           receptor, class h protein247 protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 7   YVYYLGNTITFFFFPVQNRGFLCMLIKVKQR 99
           ++  + N ITFF  PV   G  C+L K  +R
Sbjct: 15  FLISISNVITFFEIPVCTFGAYCILFKTPER 45


>Z77133-3|CAB00868.2|  149|Caenorhabditis elegans Hypothetical
           protein K03A11.5 protein.
          Length = 149

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -1

Query: 315 CFQXSSFRREQTFTQAWSRKICLCFENIFDIPYHLRKNI 199
           C Q     RE  F+ A     C+C  N  D PY + KN+
Sbjct: 15  CNQLKCKNREPDFSNA--NTTCVCHHNPSDYPYDICKNL 51


>U80028-2|AAN73869.1|  351|Caenorhabditis elegans Serpentine
           receptor, class h protein88 protein.
          Length = 351

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 10  VYYLGNTITFFFFPVQNRGFLCMLIK-VKQRESYR 111
           V Y  + +T F FPV   G  C+L K  K+  SYR
Sbjct: 28  VSYTSHFLTAFSFPVYLFGGYCILYKSPKEMSSYR 62


>Z35663-14|CAA84733.1|  805|Caenorhabditis elegans Hypothetical
           protein T04A8.16 protein.
          Length = 805

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -2

Query: 272 KPGQGKYAFASKTYSIFLTISVRISVFNTTKHXLE 168
           KPG  KY      Y    TI+  + VF+TT   LE
Sbjct: 649 KPGITKYTLVVAQYEKTNTINYSLRVFSTTDVKLE 683


>AC006680-2|AAK72302.1|  309|Caenorhabditis elegans Serpentine
           receptor, class x protein9 protein.
          Length = 309

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -2

Query: 260 GKYAFASKTYSIFLTISVRISVFNTTKHXLEYSL*CLRF*ILLND 126
           G   F+S  +SIF ++S+ ISVF       + S+  + F  +++D
Sbjct: 8   GVVLFSSSIFSIFSSVSIFISVFKLAFISRKSSIYVIAFFNIISD 52


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,553,340
Number of Sequences: 27780
Number of extensions: 133230
Number of successful extensions: 207
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)