Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1007.Seq
         (548 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6Z1L6 Cluster: Putative uncharacterized protein OSJNBa...    35   1.1  
UniRef50_Q4XXI3 Cluster: Putative uncharacterized protein; n=1; ...    35   1.4  

>UniRef50_Q6Z1L6 Cluster: Putative uncharacterized protein
           OSJNBa0091M20.22; n=1; Oryza sativa (japonica
           cultivar-group)|Rep: Putative uncharacterized protein
           OSJNBa0091M20.22 - Oryza sativa subsp. japonica (Rice)
          Length = 162

 Score = 35.1 bits (77), Expect = 1.1
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +1

Query: 472 SVSRHYRPCSGHRGRPSQPSWPA 540
           S S+H+R C+   GRPS PSWP+
Sbjct: 69  SSSQHHRRCTASVGRPSAPSWPS 91


>UniRef50_Q4XXI3 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium chabaudi|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 79

 Score = 34.7 bits (76), Expect = 1.4
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = -2

Query: 211 HYISIHLKKNFFMYSISFI*KSFVNNLSYIFIYVSSYF*SFDVYINIYLFINM 53
           +YI  ++K+ FFM    ++ K  +N L Y++I+ S     F   I  Y+ I+M
Sbjct: 18  NYIQCNIKRTFFMTVHKYLSKKIINTLIYVYIFFSLKL-GFIYNIYTYIIISM 69


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 448,651,607
Number of Sequences: 1657284
Number of extensions: 7338231
Number of successful extensions: 14375
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14312
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 35822246242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)