Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1007.Seq
         (548 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g42920.1 68415.m05318 pentatricopeptide (PPR) repeat-containi...    27   6.2  
At3g45510.1 68416.m04914 zinc finger (C3HC4-type RING finger) fa...    27   8.3  

>At2g42920.1 68415.m05318 pentatricopeptide (PPR) repeat-containing
           protein  and genefinder
          Length = 559

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 442 VKLQLCEQDTVFWSVVFTSCRK 377
           +K    E+DTV WS + ++CRK
Sbjct: 418 IKNMPVEEDTVIWSSLLSACRK 439


>At3g45510.1 68416.m04914 zinc finger (C3HC4-type RING finger)
           family protein contains a zinc finger, C3HC4 type (RING
           finger), signature, PROSITE:PS00518
          Length = 257

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 518 GLPRCPEHGL*CLLTLK 468
           G+PRCP HG    LTL+
Sbjct: 106 GVPRCPRHGCKSALTLR 122


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,706,558
Number of Sequences: 28952
Number of extensions: 155142
Number of successful extensions: 261
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)