Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1006.Seq
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyce...    28   0.90 
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    26   3.6  

>SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 456

 Score = 27.9 bits (59), Expect = 0.90
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -2

Query: 300 DTFSHT-ETVHLPLPSNRLYLQHLLATLN 217
           +T+ H+    H  L  N++YLQHL AT++
Sbjct: 113 NTYRHSISRAHPALSYNKVYLQHLFATID 141


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 429 AFVVLTVLSFFFIFLSYSNNFQCLF*N*PCCYCS 328
           A V+LT++SF  +FL     F C   +    +CS
Sbjct: 198 ADVLLTIISFLGVFLKNLRRFSCPILSYGAVFCS 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,906,615
Number of Sequences: 5004
Number of extensions: 35844
Number of successful extensions: 80
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)