Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1006.Seq
         (499 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK055388-1|BAB70913.1|  802|Homo sapiens protein ( Homo sapiens ...    32   1.3  
Y08419-1|CAA69696.1|  468|Homo sapiens nicotinic acetylcholine r...    29   9.0  
U62434-1|AAB40112.1|  468|Homo sapiens nicotinic acetylcholine r...    29   9.0  
M83712-1|AAA58357.1|  468|Homo sapiens nicotinic receptor alpha ...    29   9.0  
BC033639-1|AAH33639.1|  468|Homo sapiens cholinergic receptor, n...    29   9.0  
AJ306481-1|CAC34820.1|  468|Homo sapiens neuronal nicotinic acet...    29   9.0  

>AK055388-1|BAB70913.1|  802|Homo sapiens protein ( Homo sapiens
           cDNA FLJ30826 fis, clone FEBRA2001715, weakly similar to
           ZINC-BINDING PROTEIN A33. ).
          Length = 802

 Score = 31.9 bits (69), Expect = 1.3
 Identities = 15/33 (45%), Positives = 22/33 (66%)
 Frame = -2

Query: 330 SATLI*QISKDTFSHTETVHLPLPSNRLYLQHL 232
           S TL+ Q S+DT S  +T+  P+PS RL L+ +
Sbjct: 521 SKTLVLQTSEDTDSEEQTLPFPVPSERLPLRRM 553


>Y08419-1|CAA69696.1|  468|Homo sapiens nicotinic acetylcholine
           receptor alpha5 subunit precursor protein.
          Length = 468

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 73  KTILHYNGIIFYTH*MNKMEVCTYDIT 153
           KT++ YNG + +T   N    CT D+T
Sbjct: 149 KTVIRYNGTVTWTPPANYKSSCTIDVT 175


>U62434-1|AAB40112.1|  468|Homo sapiens nicotinic acetylcholine
           receptor alpha5 subunit precursor protein.
          Length = 468

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 73  KTILHYNGIIFYTH*MNKMEVCTYDIT 153
           KT++ YNG + +T   N    CT D+T
Sbjct: 149 KTVIRYNGTVTWTPPANYKSSCTIDVT 175


>M83712-1|AAA58357.1|  468|Homo sapiens nicotinic receptor alpha 5
           subunit protein.
          Length = 468

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 73  KTILHYNGIIFYTH*MNKMEVCTYDIT 153
           KT++ YNG + +T   N    CT D+T
Sbjct: 149 KTVIRYNGTVTWTPPANYKSSCTIDVT 175


>BC033639-1|AAH33639.1|  468|Homo sapiens cholinergic receptor,
           nicotinic, alpha 5 protein.
          Length = 468

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 73  KTILHYNGIIFYTH*MNKMEVCTYDIT 153
           KT++ YNG + +T   N    CT D+T
Sbjct: 149 KTVIRYNGTVTWTPPANYKSSCTIDVT 175


>AJ306481-1|CAC34820.1|  468|Homo sapiens neuronal nicotinic
           acetylcholine receptor alpha-5subunit protein.
          Length = 468

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 73  KTILHYNGIIFYTH*MNKMEVCTYDIT 153
           KT++ YNG + +T   N    CT D+T
Sbjct: 149 KTVIRYNGTVTWTPPANYKSSCTIDVT 175


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,170,086
Number of Sequences: 237096
Number of extensions: 1170666
Number of successful extensions: 1789
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1789
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4536472160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)