Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1006.Seq
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81592-13|CAB76412.2|  421|Caenorhabditis elegans Hypothetical p...    29   1.9  
Z78016-9|CAB76723.2|  421|Caenorhabditis elegans Hypothetical pr...    29   1.9  
U39472-7|AAP86620.2|  339|Caenorhabditis elegans Serpentine rece...    27   5.7  
U10438-14|ABB88242.1|  441|Caenorhabditis elegans Hypothetical p...    27   7.6  
AF125960-2|AAD14736.1|  478|Caenorhabditis elegans Hypothetical ...    27   7.6  
Z81553-10|CAB04501.2|  668|Caenorhabditis elegans Hypothetical p...    27   10.0 
Z80215-11|CAI70398.1|  181|Caenorhabditis elegans Hypothetical p...    27   10.0 
AL021471-1|CAA16295.1|  241|Caenorhabditis elegans Hypothetical ...    27   10.0 

>Z81592-13|CAB76412.2|  421|Caenorhabditis elegans Hypothetical
           protein R186.6 protein.
          Length = 421

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 13/21 (61%), Positives = 17/21 (80%)
 Frame = -2

Query: 426 FVVLTVLSFFFIFLSYSNNFQ 364
           F++ T+LSFFF F+S SN FQ
Sbjct: 103 FILATILSFFF-FVSSSNTFQ 122


>Z78016-9|CAB76723.2|  421|Caenorhabditis elegans Hypothetical
           protein R186.6 protein.
          Length = 421

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 13/21 (61%), Positives = 17/21 (80%)
 Frame = -2

Query: 426 FVVLTVLSFFFIFLSYSNNFQ 364
           F++ T+LSFFF F+S SN FQ
Sbjct: 103 FILATILSFFF-FVSSSNTFQ 122


>U39472-7|AAP86620.2|  339|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 35 protein.
          Length = 339

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = -3

Query: 194 CH*INW-IGHSKVLQVMSYVQTSILFIQCV*NIIPL 90
           C+ I W +G +K+L  MS++QT++   + +  IIPL
Sbjct: 98  CYAITWTVGAAKML--MSFIQTALTIERIIDRIIPL 131


>U10438-14|ABB88242.1|  441|Caenorhabditis elegans Hypothetical
           protein B0280.11 protein.
          Length = 441

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 17/67 (25%), Positives = 31/67 (46%)
 Frame = +3

Query: 192 TSK*HLTHNSVLPANVVNIVDWRVEEGEPSLCAKKCPLKSAK*GWRYSSNRVNFKKGTES 371
           T++  +T      A     ++ + EE  PS       L+ A+     S NR N +KG ++
Sbjct: 68  TNRMEVTAKGFKKAKDAKKLEKKKEETGPSKTPSTIALRRAESQMELSGNRKNVEKGVKT 127

Query: 372 Y*NKIEK 392
           +  ++EK
Sbjct: 128 WVEQLEK 134


>AF125960-2|AAD14736.1|  478|Caenorhabditis elegans Hypothetical
           protein T12B3.2 protein.
          Length = 478

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
 Frame = -2

Query: 450 INSMHFCAFVVLTVLSFFF---IFLSYSNN 370
           IN  H CAF+     +FF    IF  YSNN
Sbjct: 5   INRFHICAFITWQFANFFAGQNIFGIYSNN 34


>Z81553-10|CAB04501.2|  668|Caenorhabditis elegans Hypothetical
           protein F56H6.12 protein.
          Length = 668

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -2

Query: 234 LLATLNYVSNVTYLSLN*LDRPL*SVTGNVVRAN 133
           LL  L  VSNV +++ + + +P+  VT NV+ +N
Sbjct: 363 LLVLLFLVSNVIFINKDHIFKPVNLVTNNVITSN 396


>Z80215-11|CAI70398.1|  181|Caenorhabditis elegans Hypothetical
           protein C36B1.13 protein.
          Length = 181

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 429 AFVVLTVLSFFFIFLSYSNNFQC 361
           A  V T++   F+F SYSN  QC
Sbjct: 118 AVFVSTIVGSVFVFSSYSNRSQC 140


>AL021471-1|CAA16295.1|  241|Caenorhabditis elegans Hypothetical
           protein Y17D7C.1 protein.
          Length = 241

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
 Frame = -3

Query: 443 VCIFVLL*CLQ---FFRSFLFFYLILITF 366
           +C   LL CLQ    +  FL F+LI++TF
Sbjct: 91  ICRHFLLFCLQCRVVYGDFLLFFLIILTF 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,498,436
Number of Sequences: 27780
Number of extensions: 201102
Number of successful extensions: 495
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)