Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1006.Seq
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   7.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   7.1  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   9.4  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 120 EQNGSLHVRHYL*HFRVAYPINSMTSK*HLT 212
           E+N   H+R+ L   +V  P+   TS+ H T
Sbjct: 57  EKNRRAHLRNCLEKLKVLVPLGPETSR-HTT 86


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = -1

Query: 328 RHPYLADFKGHFFAHRDGSPSSTLQSTIFTTFAGNTELCVK 206
           R+P+  +F  H F  R  + S T  +  +T F    +   K
Sbjct: 422 RNPWFVEFWEHHFQCRYPNASVTPYNKNYTKFCSTEKRLTK 462


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 73  KTILHYNGIIFYT 111
           K ILHY G + +T
Sbjct: 124 KAILHYTGKVLWT 136


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,718
Number of Sequences: 438
Number of extensions: 2696
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)