Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1006.Seq
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g11490.1 68418.m01341 adaptin family protein similar to SP|Q9...    27   5.3  
At5g07370.4 68418.m00844 inositol polyphosphate 6-/3-/5-kinase 2...    27   7.0  
At5g07370.3 68418.m00843 inositol polyphosphate 6-/3-/5-kinase 2...    27   7.0  
At5g07370.2 68418.m00842 inositol polyphosphate 6-/3-/5-kinase 2...    27   7.0  
At5g07370.1 68418.m00841 inositol polyphosphate 6-/3-/5-kinase 2...    27   7.0  
At3g44530.1 68416.m04786 transducin family protein / WD-40 repea...    27   7.0  

>At5g11490.1 68418.m01341 adaptin family protein similar to
           SP|Q9WV76 Adapter-related protein complex 4 beta 1
           subunit (Beta subunit of AP- 4) {Mus musculus},
           beta-adaptin Drosophila 1 {Drosophila melanogaster}
           GI:434902; contains Pfam profile: PF01602 Adaptin N
           terminal region
          Length = 841

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 310 DFKGHFFAHRDGSPSSTLQSTIFTTFAGNTELCVK 206
           +FK  FFA ++  PS+ L   I  T +   ++ VK
Sbjct: 783 NFKFFFFAQKESEPSNYLTECIINTSSAKAQIKVK 817


>At5g07370.4 68418.m00844 inositol polyphosphate 6-/3-/5-kinase 2a
           (IPK2a) contains Pfam domain, PF03770: Inositol
           polyphosphate kinase
          Length = 286

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -1

Query: 316 LADFKGHFFAHRDGSPSSTLQSTIFTTFAGNTELCVKCH 200
           L D KG FF    G     ++   + +F+ NTE+    H
Sbjct: 23  LVDDKGRFFKPLQGDSRGEIEVKFYESFSSNTEVPEHIH 61


>At5g07370.3 68418.m00843 inositol polyphosphate 6-/3-/5-kinase 2a
           (IPK2a) contains Pfam domain, PF03770: Inositol
           polyphosphate kinase
          Length = 286

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -1

Query: 316 LADFKGHFFAHRDGSPSSTLQSTIFTTFAGNTELCVKCH 200
           L D KG FF    G     ++   + +F+ NTE+    H
Sbjct: 23  LVDDKGRFFKPLQGDSRGEIEVKFYESFSSNTEVPEHIH 61


>At5g07370.2 68418.m00842 inositol polyphosphate 6-/3-/5-kinase 2a
           (IPK2a) contains Pfam domain, PF03770: Inositol
           polyphosphate kinase
          Length = 286

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -1

Query: 316 LADFKGHFFAHRDGSPSSTLQSTIFTTFAGNTELCVKCH 200
           L D KG FF    G     ++   + +F+ NTE+    H
Sbjct: 23  LVDDKGRFFKPLQGDSRGEIEVKFYESFSSNTEVPEHIH 61


>At5g07370.1 68418.m00841 inositol polyphosphate 6-/3-/5-kinase 2a
           (IPK2a) contains Pfam domain, PF03770: Inositol
           polyphosphate kinase
          Length = 286

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -1

Query: 316 LADFKGHFFAHRDGSPSSTLQSTIFTTFAGNTELCVKCH 200
           L D KG FF    G     ++   + +F+ NTE+    H
Sbjct: 23  LVDDKGRFFKPLQGDSRGEIEVKFYESFSSNTEVPEHIH 61


>At3g44530.1 68416.m04786 transducin family protein / WD-40 repeat
           family protein contains 6 (4 significant) WD-40 repeats
           (PF0400); nuclear protein HIRA, mouse, PIR:S68141
          Length = 1051

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 237 VVNIVDWRVEEGEPSLCAKKCPLKSA 314
           ++ + DW+  E  P +C + CP + A
Sbjct: 588 LIRVFDWKDGEAAPPVCLEACPREHA 613


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,350,663
Number of Sequences: 28952
Number of extensions: 167409
Number of successful extensions: 350
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)