Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1005.Seq
         (563 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    29   0.36 
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    28   0.82 
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch...    28   1.1  
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S...    27   1.9  
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    27   1.9  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    27   2.5  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    26   4.4  
SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit T...    26   4.4  
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    25   5.8  

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 29.5 bits (63), Expect = 0.36
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
 Frame = +1

Query: 343 SCR--FLGELCHSDTSAEGCH*ICEAILGRRSR*EEEVEATPAHTGTPATED-PVPHPL 510
           SC+  F  +LCH D   E     C+   G+R    E V  +P H G P  E  P   PL
Sbjct: 707 SCKTHFCEKLCHPDGECESS---CKKECGKRRMYCEHVCQSPCHAGHPCDERIPCKAPL 762


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 19/47 (40%), Positives = 22/47 (46%)
 Frame = +3

Query: 411 SDPWKKVAVRRRS*SNSCPYWHSCN*RSSPSSPLLGIIAFAGRQGSY 551
           SDP    A   RS   SC    SC    SPSS ++G +     QGSY
Sbjct: 157 SDPSPSTAQNHRSPPASCKRLSSCESSGSPSSRVVGSL-----QGSY 198


>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
           Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 830

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 135 SALPSLIGRRLRHYSLRPQRILLTPP 58
           SAL  L  R L H  ++PQ +LL PP
Sbjct: 143 SALQFLRSRSLIHRDVKPQNLLLQPP 168


>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
           Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 487 EDPVPHPLFSESLPLPAVKGLML 555
           E PV HP   ESL +P  KG++L
Sbjct: 162 ELPVKHPELFESLGIPQPKGILL 184


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +3

Query: 117 SVMGVLKTCSDDNVALCLKEKALRYVENVSNSRE 218
           S MG+LK   DD++ +   ++ LR+    S  ++
Sbjct: 192 SPMGILKNIQDDSMTIVTNKRILRFEPKTSRGKD 225


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -2

Query: 433 ATFFQGSLRRFNGTLRQTYLNDKVLQEIGNSVQKSEVYLI 314
           +TF    LR F+ T    YL+D  L+EI   V  S + L+
Sbjct: 476 STFISLLLRYFSPTYGNIYLDDFPLEEIDEHVLGSTITLV 515


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 442 EEVEATPAHTGTPATEDPVPH 504
           E   A P H G+P TE P P+
Sbjct: 527 ENPPAMPDHNGSPTTEPPKPN 547


>SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit
           Tfb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 477

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -2

Query: 418 GSLRRFNGTLRQTYLNDKVLQEIGNSVQKSEVYLILPG 305
           G+ +RFN    +TYL +    ++      S+V L + G
Sbjct: 271 GNSKRFNNENEETYLKESGFHDLEEEASDSKVVLKIKG 308


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -1

Query: 185 QSFFLETQCDVVIGA-SFQHSHH*SEDVFVTIRCGHSAYC 69
           ++ FL+   +V +G   F      S   F+  RCG  AYC
Sbjct: 152 ENIFLDKAYNVKLGDFGFSRDSDCSRRTFMNTRCGTVAYC 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,215,992
Number of Sequences: 5004
Number of extensions: 43078
Number of successful extensions: 124
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)