Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1005.Seq
         (563 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0358 - 4692079-4692567                                           34   0.090
01_06_1365 - 36690267-36692222                                         31   0.63 

>04_01_0358 - 4692079-4692567
          Length = 162

 Score = 33.9 bits (74), Expect = 0.090
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = +3

Query: 168 LKEKALRYVENVSNSRELNLIDGVSLIGQAPLDQPGPSSLYPTSPEP 308
           +KE AL+Y  N+    E N+    S+I   PLD P P  L  + P P
Sbjct: 26  IKELALKYKINIQEQIEENIKIPKSIISLLPLDPPPPLVLSSSQPAP 72


>01_06_1365 - 36690267-36692222
          Length = 651

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -1

Query: 551 IRPLTAGKGNDSEKRG*GTGSSVAGVPVWAGVASTSSSY-RDLL 423
           + P+ +G G    +RG G G    G+P  AG   TS S+ R LL
Sbjct: 605 LTPMRSGGGGGGARRGGGGGGGGGGLPAKAGRQLTSQSFARSLL 648


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,215,640
Number of Sequences: 37544
Number of extensions: 318887
Number of successful extensions: 1043
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)