Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1005.Seq
         (563 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55598| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_16527| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12)                    28   6.1  
SB_50891| Best HMM Match : CsbD (HMM E-Value=3.4)                      28   6.1  
SB_25239| Best HMM Match : PKD (HMM E-Value=5.2)                       27   8.0  
SB_2033| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.0  

>SB_55598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 668

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 5/37 (13%)
 Frame = -3

Query: 147 RSKFSALPSLIGR-RL----RHYSLRPQRILLTPPGA 52
           R++F   PS++ R RL    +  + RP+RI+ +PPGA
Sbjct: 126 RTRFMRTPSVMDRHRLWTLRKEVAFRPRRIIYSPPGA 162


>SB_16527| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 518

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 126 PSLIGRRLRHYSLRPQRILLTPPGASWF 43
           P+  G +LR+ S  PQ + + PP   W+
Sbjct: 4   PNKRGHQLRNLSSNPQGLAIRPPSVLWY 31


>SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12)
          Length = 1650

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -1

Query: 461 GVASTSSSYRDLLPRIASQIQWHPSADVSE*QSSPRNRQLRPKV 330
           G+   S   RDL  ++A++++  PS      +SSPR R ++  V
Sbjct: 33  GLRPRSEEKRDLFLQLANEVKTSPSPVRKRRRSSPRKRHVQATV 76


>SB_50891| Best HMM Match : CsbD (HMM E-Value=3.4)
          Length = 311

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 380 RLPKGAIESAKRSLEEGRG 436
           RL KG+IE  KR+ E+G+G
Sbjct: 121 RLNKGSIEQGKRATEQGKG 139


>SB_25239| Best HMM Match : PKD (HMM E-Value=5.2)
          Length = 193

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 21/66 (31%), Positives = 29/66 (43%)
 Frame = +1

Query: 124 WEC*KLAPMTTSHCVSRKKLCDTWKMSRILENST*SMASV*SVKLP*ISQVLRAFTRRAQ 303
           W+  + A   T  CV  KK+ DTW +   +     S+    S K   +SQ    F  R Q
Sbjct: 41  WKVLRNASCATGSCVDVKKMMDTWTLQ--MGFPVVSVKRDGSSKYS-VSQKRFLFDNRTQ 97

Query: 304 SQGESS 321
           S G+ S
Sbjct: 98  STGDPS 103


>SB_2033| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 995

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 316 SSRPQTFGRSCRFLGELCHSDTSAEGCH*ICEAILGRRSR*EEE 447
           +++ +T    CR L  +CH D     CH  C+A   RR R + E
Sbjct: 814 NAKSKTIYLHCRVL--VCHKDDPQSRCHQGCQASERRRRRGQGE 855


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,034,354
Number of Sequences: 59808
Number of extensions: 362622
Number of successful extensions: 974
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)