Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1005.Seq
         (563 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    25   1.7  
DQ370037-1|ABD18598.1|  121|Anopheles gambiae putative TIL domai...    23   5.2  
AJ439060-2|CAD27753.1|  135|Anopheles gambiae putative cytoskele...    23   5.2  
AJ438610-10|CAD27482.1|  135|Anopheles gambiae putative cytoskel...    23   5.2  

>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
            polyprotein protein.
          Length = 1726

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 136  KLAPMTTSHCVSRKKLCDTWKMSRIL 213
            K+ P+ T H ++R +LC    + ++L
Sbjct: 1081 KVTPLATKHTIARLELCAAHLLGKLL 1106


>DQ370037-1|ABD18598.1|  121|Anopheles gambiae putative TIL domain
           polypeptide protein.
          Length = 121

 Score = 23.4 bits (48), Expect = 5.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 442 EEVEATPAHTGTPATEDPVPHP 507
           E V ATP  + T ATE+  P P
Sbjct: 33  ETVPATPEPSTTEATEEESPPP 54


>AJ439060-2|CAD27753.1|  135|Anopheles gambiae putative cytoskeletal
           regulator protein.
          Length = 135

 Score = 23.4 bits (48), Expect = 5.2
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -2

Query: 250 PIRLTPSIKLSSREFETFSTYRKAFSLRHNATL--SSEQVFS 131
           P    P+I ++  EFE  +    + +LR  A+L   S Q+F+
Sbjct: 23  PYAAAPTIPVADNEFEALTNVTLSNALRQLASLVYISNQIFT 64


>AJ438610-10|CAD27482.1|  135|Anopheles gambiae putative
           cytoskeletal regulator protein.
          Length = 135

 Score = 23.4 bits (48), Expect = 5.2
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -2

Query: 250 PIRLTPSIKLSSREFETFSTYRKAFSLRHNATL--SSEQVFS 131
           P    P+I ++  EFE  +    + +LR  A+L   S Q+F+
Sbjct: 23  PYAAAPTIPVADNEFEALTNVTLSNALRQLASLVYISNQIFT 64


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 546,199
Number of Sequences: 2352
Number of extensions: 10560
Number of successful extensions: 27
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 52983882
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)