Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1005.Seq
         (563 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68316-6|CAA92682.2|  357|Caenorhabditis elegans Hypothetical pr...    29   2.3  
U80033-4|AAC48198.2|  467|Caenorhabditis elegans Hypothetical pr...    27   7.0  

>Z68316-6|CAA92682.2|  357|Caenorhabditis elegans Hypothetical
           protein K08E4.5 protein.
          Length = 357

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = -1

Query: 437 YRD---LLPRIASQIQWHPSADVSE*QSSPRNRQLRPK 333
           YRD   LLP I+S + W+P++D+S   S   N    P+
Sbjct: 283 YRDIICLLPYISSSLTWYPASDLSAFWSLHENHSESPE 320


>U80033-4|AAC48198.2|  467|Caenorhabditis elegans Hypothetical
           protein T23H2.4 protein.
          Length = 467

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 17/63 (26%), Positives = 32/63 (50%)
 Frame = +3

Query: 120 VMGVLKTCSDDNVALCLKEKALRYVENVSNSRELNLIDGVSLIGQAPLDQPGPSSLYPTS 299
           V G  KT + D V   ++ ++ + V  ++  + L ++   S++ Q P+    P SL+P  
Sbjct: 350 VDGESKTLTCDQVTSPVQPQSNQLVR-LTALQNLKMLPIESILYQPPISTTSPISLFPIP 408

Query: 300 PEP 308
           P P
Sbjct: 409 PTP 411


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,363,664
Number of Sequences: 27780
Number of extensions: 253415
Number of successful extensions: 785
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)