Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1005.Seq
         (563 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31530.1 68417.m04477 expressed protein                             28   3.7  
At3g06670.1 68416.m00786 expressed protein                             28   3.7  
At1g51680.2 68414.m05823 4-coumarate--CoA ligase 1 / 4-coumaroyl...    28   3.7  
At1g51680.1 68414.m05822 4-coumarate--CoA ligase 1 / 4-coumaroyl...    28   3.7  
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex...    27   8.7  

>At4g31530.1 68417.m04477 expressed protein
          Length = 324

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +1

Query: 454 ATPAHTGTPATEDPVPHPLFSESLPLPA 537
           A P+++   AT+  + +PLF+  LPLP+
Sbjct: 10  APPSYSRFAATKSQIRNPLFTSPLPLPS 37


>At3g06670.1 68416.m00786 expressed protein
          Length = 865

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = +3

Query: 99  DEDVFRSVMGVLKTCSD-DNV-ALCLKEKALRYVENVSNSRELNLIDGVSLI 248
           D D FR++MGV K C D +NV  L +    ++ +  +++S+ L  I G  LI
Sbjct: 167 DHDFFRNLMGVFKICEDLENVDGLHMIFNIVKGIILLNSSQILEKIFGDELI 218


>At1g51680.2 68414.m05823 4-coumarate--CoA ligase 1 /
           4-coumaroyl-CoA synthase 1 (4CL1) identical to SP|Q42524
           4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1)
           (4-coumaroyl-CoA synthase 1) {Arabidopsis thaliana}
          Length = 490

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 126 GVLKTCSDDNVALCLKEKALRYVENVSNSRELN-LIDGVSL 245
           GV+  C DDN ++ + E  LR+ E   ++ E + +ID V +
Sbjct: 159 GVVIVCIDDNESVPIPEGCLRFTELTQSTTEASEVIDSVEI 199


>At1g51680.1 68414.m05822 4-coumarate--CoA ligase 1 /
           4-coumaroyl-CoA synthase 1 (4CL1) identical to SP|Q42524
           4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1)
           (4-coumaroyl-CoA synthase 1) {Arabidopsis thaliana}
          Length = 561

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 126 GVLKTCSDDNVALCLKEKALRYVENVSNSRELN-LIDGVSL 245
           GV+  C DDN ++ + E  LR+ E   ++ E + +ID V +
Sbjct: 159 GVVIVCIDDNESVPIPEGCLRFTELTQSTTEASEVIDSVEI 199


>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 956

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 460 PAHTGTPATEDPVPHPLFSESLPLP 534
           P H+  P  + P P P+FS   P P
Sbjct: 723 PVHSPPPPVQSPPPPPVFSPPPPAP 747


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,889,362
Number of Sequences: 28952
Number of extensions: 242472
Number of successful extensions: 735
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)