Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1004.Seq
         (554 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc...    30   0.26 
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    29   0.61 
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    28   0.80 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   1.4  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    26   3.2  
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch...    26   3.2  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   3.2  
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo...    26   3.2  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   5.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   5.7  
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    25   7.5  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   9.9  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    25   9.9  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   9.9  

>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 150

 Score = 29.9 bits (64), Expect = 0.26
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 147 NSLPP-HQAFPSPADRPPVIPTTVSARDRPPP 239
           N +PP  QA+  P   PP +P   ++ + PPP
Sbjct: 96  NPMPPMSQAYRPPPTEPPTVPAYETSSEFPPP 127


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 28.7 bits (61), Expect = 0.61
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +3

Query: 150 SLPPHQAFPSPADRPPVIPTTVSARDRPPPVSQPLHLNP 266
           SLP       P  +PPVIP     +  P  +  P+H +P
Sbjct: 169 SLPSPNLPHQPISKPPVIPNLPKLQVHPNRLPHPIHNHP 207


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 28.3 bits (60), Expect = 0.80
 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
 Frame = +3

Query: 162 HQAFPSPA---DR-PPVIPTTVSA-RDRPPPVSQPLHLNPSWIFTRSA 290
           H   PSPA   +R  P  PTTVS+ R+ PP  S P    P  + T S+
Sbjct: 328 HSKSPSPAFTANRFSPAAPTTVSSERNAPPYPSAPTRPTPPTVQTSSS 375


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +3

Query: 174  PSPADRPPVIPTTVSARDRPPPVSQPLHLNPS 269
            P P   PPV  ++  A   PPPV  P    PS
Sbjct: 1044 PIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPS 1075



 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 174  PSPADRPPVIPTTVSARDRPPPVSQPLHLNPS 269
            P P++ PPV   +V     PPP + P    PS
Sbjct: 1192 PPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPS 1223


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 150 SLPPHQAFPSPADRPPVIPTTVSARDRPPPVSQP 251
           SL P  + P+    PP IPT  +     PPV++P
Sbjct: 360 SLTPLSSRPAHTSLPP-IPTVQTTSSNVPPVNRP 392


>SPCC320.10 |srp72||signal recognition particle subunit
           Srp72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 423 PDPERWIPLVKRSN 464
           PDP+RWIP   R+N
Sbjct: 533 PDPQRWIPKRDRTN 546


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 16/39 (41%), Positives = 17/39 (43%)
 Frame = +3

Query: 150  SLPPHQAFPSPADRPPVIPTTVSARDRPPPVSQPLHLNP 266
            S P   + P P       P T S   R PPV QP H NP
Sbjct: 919  SAPAIASPPPPKVGETYHPPTASGT-RVPPVQQPSHPNP 956



 Score = 24.6 bits (51), Expect = 9.9
 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 9/61 (14%)
 Frame = +2

Query: 377  ASPSPSRVGQT--PPVGAG-------PGTVDTPREAIKPHSSTSPERRIEPMAQMLPSER 529
            ASP P +VG+T  PP  +G         +   P   + P S  +   RI     M PS  
Sbjct: 924  ASPPPPKVGETYHPPTASGTRVPPVQQPSHPNPYTPVAPQSPVAAASRISSSPNMPPSNP 983

Query: 530  F 532
            +
Sbjct: 984  Y 984


>SPBC800.09 |sum2||G2/M transition checkpoint protein
           Sum2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 20/76 (26%), Positives = 27/76 (35%), Gaps = 2/76 (2%)
 Frame = +3

Query: 15  SVPPAPLFARPNHHDHRFRME--QLVSEQFRHHGLNLXXXXXXXXXNSLPPHQAFPSPAD 188
           S P  P +  P+      R E  Q VS+ F                N  PP+ A   PA 
Sbjct: 162 STPAVPYYGAPDQQQMGQRPEFAQNVSQGFAGQAPYNVRPGYGMPSNQKPPNFAPGMPAP 221

Query: 189 RPPVIPTTVSARDRPP 236
            P  +  + S +  PP
Sbjct: 222 GPTAVSASPSLQSMPP 237


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +3

Query: 147 NSLPPHQAFPSPADRPPVIPTTVSARDRPPPVSQPLHLNPSWIFTRSA 290
           +SLPP     +P   PP  P+  SA    PP   P  L+ + +   S+
Sbjct: 169 SSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAPVANTSS 216



 Score = 25.0 bits (52), Expect = 7.5
 Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
 Frame = +3

Query: 150 SLPPHQAFP--SPADRPPVIPTTVSARDRPPPVSQP 251
           S PP  + P  SPA  PP+           PP +QP
Sbjct: 142 SAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQP 177


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = +3

Query: 156 PPHQAFPSPADRPPVIPTTVSARDRPPPVSQP 251
           PP    P+PA  P  +P        PPP   P
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767


>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 156 PPHQAFPSPADRPPVIPTTVSARDRPPPVSQPLHLNPS 269
           PP  +  + A++   I T+  ++D P    +PLHLN S
Sbjct: 228 PPPVSATNEANKLSDIQTSSPSQDIPAKHLEPLHLNRS 265


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = +3

Query: 147  NSLPPHQAFPSPADRPPVIPTTVSARDRP--PPVSQP 251
            ++ PP  + P+P   P  +P   SA   P  PP + P
Sbjct: 1696 SAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 12/48 (25%), Positives = 19/48 (39%)
 Frame = +2

Query: 380 SPSPSRVGQTPPVGAGPGTVDTPREAIKPHSSTSPERRIEPMAQMLPS 523
           +PS  +    P V   P     P   + P   ++P+R   P+    PS
Sbjct: 511 TPSVPQPPAAPVVPEAPSVHQPPAAPVAPEVPSAPQRPAAPVVPEAPS 558



 Score = 24.6 bits (51), Expect = 9.9
 Identities = 12/47 (25%), Positives = 20/47 (42%)
 Frame = +2

Query: 383 PSPSRVGQTPPVGAGPGTVDTPREAIKPHSSTSPERRIEPMAQMLPS 523
           PS  +    P V   P     P   + P + + P+  + P+A  +PS
Sbjct: 542 PSAPQRPAAPVVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPS 588


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 150 SLPPHQAFPSPADRPPVIPTTVSARDRPPP 239
           S+PP     +P   P V PT+ S+   PPP
Sbjct: 290 SIPPTGNSTTPVT-PTVPPTSTSSTSTPPP 318



 Score = 24.6 bits (51), Expect = 9.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 150 SLPPHQAFPSPADRPPVIPTTVSARDRPPP 239
           S+PP     +P   P V PT+ S+   PPP
Sbjct: 344 SIPPTGNSTTPVT-PTVPPTSTSSTSTPPP 372


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,974,422
Number of Sequences: 5004
Number of extensions: 34361
Number of successful extensions: 119
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)