Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV1004.Seq
(554 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U27312-9|AAA68252.1| 239|Caenorhabditis elegans Hypothetical pr... 34 0.079
AF026212-3|AAF99974.2| 1172|Caenorhabditis elegans Hypothetical ... 33 0.10
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 32 0.24
Z29443-10|CAA82578.2| 315|Caenorhabditis elegans Hypothetical p... 31 0.74
AC006611-4|AAK85456.2| 328|Caenorhabditis elegans Hypothetical ... 31 0.74
AB121091-1|BAD14918.1| 315|Caenorhabditis elegans T-box transcr... 31 0.74
Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical pr... 30 0.97
Z70287-6|CAH04747.1| 443|Caenorhabditis elegans Hypothetical pr... 30 1.3
AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical... 30 1.3
AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical ... 30 1.3
AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical... 29 1.7
Z81125-3|CAB03384.1| 790|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z68760-2|CAA92995.1| 597|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z68753-3|CAA92988.3| 984|Caenorhabditis elegans Hypothetical pr... 29 3.0
U97194-8|AAB52447.3| 1254|Caenorhabditis elegans Prion-like-(q/n... 29 3.0
U80840-12|AAB37925.1| 694|Caenorhabditis elegans Hypothetical p... 28 3.9
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 28 3.9
Z71264-1|CAA95828.1| 998|Caenorhabditis elegans Hypothetical pr... 28 5.2
AL132943-5|CAB81977.1| 367|Caenorhabditis elegans Hypothetical ... 28 5.2
AL032654-7|CAA21719.1| 219|Caenorhabditis elegans Hypothetical ... 28 5.2
AF040661-10|AAG24215.1| 426|Caenorhabditis elegans Hypothetical... 28 5.2
Z34533-1|CAA84302.3| 730|Caenorhabditis elegans Hypothetical pr... 27 6.9
AL023838-4|CAA19504.1| 218|Caenorhabditis elegans Hypothetical ... 27 6.9
Z93395-2|CAB07705.1| 905|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z83112-5|CAB05541.1| 905|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr... 27 9.1
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 27 9.1
U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeas... 27 9.1
AC092690-3|AAK73857.1| 1145|Caenorhabditis elegans Hypothetical ... 27 9.1
>U27312-9|AAA68252.1| 239|Caenorhabditis elegans Hypothetical
protein F26A1.11 protein.
Length = 239
Score = 33.9 bits (74), Expect = 0.079
Identities = 20/56 (35%), Positives = 22/56 (39%)
Frame = +3
Query: 156 PPHQAFPSPADRPPVIPTTVSARDRPPPVSQPLHLNPSWIFTRSACGNWPVRPVQG 323
PP PS RPP S RPPP QP W + G W +R QG
Sbjct: 36 PPRPPSPSRPQRPPP-----SRPQRPPPPRQP-RCEAGWTLVQRQNGGWCIRIFQG 85
>AF026212-3|AAF99974.2| 1172|Caenorhabditis elegans Hypothetical
protein F52G3.1 protein.
Length = 1172
Score = 33.5 bits (73), Expect = 0.10
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +3
Query: 174 PSPADRPPVIPTTVSARDRPPPVSQPLH-LNPSWIFTRSA 290
P+ A PP PT + PPP QP + L PSW+ +A
Sbjct: 91 PNGAAEPPQTPTNQAPAVPPPPPPQPANDLRPSWLVAANA 130
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 32.3 bits (70), Expect = 0.24
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +3
Query: 147 NSLPPHQAFPSPADRPPVIPTTVSARDRPPPVSQPLHLNPSWIFTRSACG 296
++LP Q+FP P+ PP TT + ++P VS + S+ + S+ G
Sbjct: 18 HNLPVAQSFPPPSHPPPPSATTNPSSNKPSTVSSAAQIYSSFPSSTSSSG 67
>Z29443-10|CAA82578.2| 315|Caenorhabditis elegans Hypothetical
protein T07C4.2 protein.
Length = 315
Score = 30.7 bits (66), Expect = 0.74
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 192 PPVIPTTVSARDRPPPVSQPLHLNPSWIFTRSACGNWPVRPVQ 320
PP++P + PPP PL + + +A GN+P P Q
Sbjct: 235 PPLMPRILPTMIPPPPAINPLFYSLPYFSHLAATGNFPPVPFQ 277
>AC006611-4|AAK85456.2| 328|Caenorhabditis elegans Hypothetical
protein C30F8.3 protein.
Length = 328
Score = 30.7 bits (66), Expect = 0.74
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 174 PSPADRPPVIPTTVSARDRPPPVSQPLHLNPSW 272
P P PPV+P+ SAR P V P+ ++ S+
Sbjct: 73 PPPPPPPPVLPSAASARQLPSAVVIPVSVDSSY 105
>AB121091-1|BAD14918.1| 315|Caenorhabditis elegans T-box
transcription factor TBX-8 protein.
Length = 315
Score = 30.7 bits (66), Expect = 0.74
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 192 PPVIPTTVSARDRPPPVSQPLHLNPSWIFTRSACGNWPVRPVQ 320
PP++P + PPP PL + + +A GN+P P Q
Sbjct: 235 PPLMPRILPTMIPPPPAINPLFYSLPYFSHLAATGNFPPVPFQ 277
>Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical
protein T10B10.1 protein.
Length = 428
Score = 30.3 bits (65), Expect = 0.97
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +3
Query: 156 PPHQAFPSPADRPPV-IPTTVSARDRPPPVSQPLHLNPSW 272
PP P+PA +PPV P T + P +P H +PS+
Sbjct: 328 PPATTRPAPASQPPVREPETPDSGYPSPAPQEPAHPSPSY 367
>Z70287-6|CAH04747.1| 443|Caenorhabditis elegans Hypothetical
protein R09E10.9 protein.
Length = 443
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 156 PPHQAFPSPADRPPVIPTTVSARDRPPPVSQPLHLNPS 269
P A PSP+ P +PTT A +P V P+ P+
Sbjct: 383 PTVSALPSPSVSPAPVPTTSCAPQKPLVVQPPVPFAPN 420
>AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical
protein Y51H4A.12 protein.
Length = 1677
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +3
Query: 12 PSVPPAPLFARPNHHDHRFRMEQLVSE 92
P PP PL RP+H D M Q V E
Sbjct: 627 PPPPPPPLVLRPHHQDETLAMVQSVFE 653
>AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical
protein R148.3a protein.
Length = 1115
Score = 29.9 bits (64), Expect = 1.3
Identities = 21/81 (25%), Positives = 29/81 (35%), Gaps = 1/81 (1%)
Frame = +3
Query: 12 PSVPPAPLFARPNHHDHRFRMEQLVSEQFRHH-GLNLXXXXXXXXXNSLPPHQAFPSPAD 188
P PAP+ PN F ++ L+++ R N P P+PA+
Sbjct: 302 PLEAPAPVENAPNLPTPTFSVDDLMAQAARDALNSNSIVPDAPKVEEPEPAPTPAPAPAE 361
Query: 189 RPPVIPTTVSARDRPPPVSQP 251
P V P PPP P
Sbjct: 362 DPVVTPAPEELTTPPPPAPPP 382
>AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical
protein F15E6.1 protein.
Length = 1655
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +3
Query: 9 HPSVPPAPLFARPNHHDHRFRMEQLVSE 92
H PP PL RP+H D M Q V E
Sbjct: 620 HVPPPPPPLVLRPHHQDETLAMVQSVFE 647
>Z81125-3|CAB03384.1| 790|Caenorhabditis elegans Hypothetical
protein T22A3.5 protein.
Length = 790
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 156 PPHQAFPSPADRPPVIPTTVSARDRPPPVSQPL 254
PP Q FP P + PT ++ PPP QP+
Sbjct: 727 PPPQFFPMIGGPPLMHPTFSTSAPPPPPPPQPM 759
>Z68760-2|CAA92995.1| 597|Caenorhabditis elegans Hypothetical
protein F36H1.3 protein.
Length = 597
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 192 PPVIPTTVSARDRPPPVSQPLHLNPS 269
PP IP+ PPPV +P+ +PS
Sbjct: 505 PPAIPSPAKLPTAPPPVEKPVTPSPS 530
>Z68753-3|CAA92988.3| 984|Caenorhabditis elegans Hypothetical
protein ZC518.2 protein.
Length = 984
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 156 PPHQAFPSPADRPPVIPTTVSARDRPPPVSQP 251
PP +P+ +PP+ SAR P P +QP
Sbjct: 138 PPSVGSAAPSIQPPIPSALASARPAPFPAAQP 169
>U97194-8|AAB52447.3| 1254|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 20
protein.
Length = 1254
Score = 28.7 bits (61), Expect = 3.0
Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
Frame = +3
Query: 51 HHDHRFRMEQLVSEQFRHHGLNLXXXXXXXXXNSLPPHQAFPSPADRPP-VIPTTVSARD 227
HH+ M +Q + PP Q +P +PP V+PTT ++
Sbjct: 1187 HHEEMMMMHHQQQQQLQQQQQMHQMPLHHLPQQPPPPSQNPQNPLPQPPQVMPTTPTSAA 1246
Query: 228 RPPPVSQ 248
P P SQ
Sbjct: 1247 PPQPQSQ 1253
>U80840-12|AAB37925.1| 694|Caenorhabditis elegans Hypothetical
protein F08D12.1 protein.
Length = 694
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 423 PDPERWIPLVKRSNHIARLHQNAE 494
PDPERW+P +RS + R +N E
Sbjct: 615 PDPERWLPRQERSTY-KRKRKNRE 637
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = +3
Query: 159 PHQAFPSPADRPPVIPTTVSARDRPPPVSQPLHLNPS 269
P A P PA P P PPP P H P+
Sbjct: 88 PQNAVPVPAPPPAPYPQHAVPAPAPPPAPYPQHAVPA 124
>Z71264-1|CAA95828.1| 998|Caenorhabditis elegans Hypothetical protein
K07G5.1 protein.
Length = 998
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +3
Query: 150 SLPPHQAFPSPADRPPVIPTTVSARDRPPPVSQPLHLNP 266
SL P +A SP I T+ SA D PPP+ Q + P
Sbjct: 909 SLSPREA-SSPTTSNSKIMTSSSASDSPPPLPQRNRVGP 946
>AL132943-5|CAB81977.1| 367|Caenorhabditis elegans Hypothetical
protein Y116F11B.8 protein.
Length = 367
Score = 27.9 bits (59), Expect = 5.2
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Frame = +3
Query: 150 SLPPHQAFPS---PADRPPVIPTTVSARDRPPPVSQPLHLNPS 269
SLPP PS P + PP P T SA PV+ P P+
Sbjct: 199 SLPPPTDPPSTLGPMETPPNSPGTSSAATTSAPVTSPAPTEPA 241
>AL032654-7|CAA21719.1| 219|Caenorhabditis elegans Hypothetical
protein Y52B11A.5 protein.
Length = 219
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Frame = +3
Query: 219 ARDRPPPVSQPLHLNPSWIFTRSACGNWPVRPVQGR---PQA 335
AR PPP + + W + + GNW +R G+ PQA
Sbjct: 32 ARPPPPPPPRGVKCPAGWTLWKRSQGNWCIRVFHGQYTNPQA 73
>AF040661-10|AAG24215.1| 426|Caenorhabditis elegans Hypothetical
protein W10G11.6 protein.
Length = 426
Score = 27.9 bits (59), Expect = 5.2
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Frame = +3
Query: 192 PPVIPTTVSARDRPPPVSQPLHLNPSWIFTRSACGNWPVRPVQG----RPQAIRALLAPG 359
PPV+ T A P + + P W FT G W +R G + +A RA A G
Sbjct: 62 PPVVVVTTPAPVVVPTPAVVVGCLPGWRFTNRPSGGWCMRVFTGIHDAKIEAERACAAKG 121
>Z34533-1|CAA84302.3| 730|Caenorhabditis elegans Hypothetical
protein B0285.1 protein.
Length = 730
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 153 LPPHQAFPSPADRPPVIPTTVSARDRPPPVSQPLHLNPSWIFTRSA 290
LPP+ F +P RPP P ++ PP S +H + F+ S+
Sbjct: 211 LPPNSQFMTPPPRPPPAPFSI------PPPSVDIHFAATASFSLSS 250
>AL023838-4|CAA19504.1| 218|Caenorhabditis elegans Hypothetical
protein Y43C5A.4 protein.
Length = 218
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +3
Query: 174 PSPADRPPVIPTTVSARDRPPP-VSQPLH 257
PSPA P +P V +PPP +P H
Sbjct: 161 PSPAPPVPAVPAAVEQEWKPPPEFERPKH 189
>Z93395-2|CAB07705.1| 905|Caenorhabditis elegans Hypothetical
protein ZC101.1 protein.
Length = 905
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 9 HPSVPPAPLFARPNHHDHRFRMEQLVSEQFRHH 107
HP+ P P ++ +H +HR R+E+ + HH
Sbjct: 696 HPAQPAQP--SQDHHEEHRRRLEEHRRREEEHH 726
>Z83112-5|CAB05541.1| 905|Caenorhabditis elegans Hypothetical
protein ZC101.1 protein.
Length = 905
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 9 HPSVPPAPLFARPNHHDHRFRMEQLVSEQFRHH 107
HP+ P P ++ +H +HR R+E+ + HH
Sbjct: 696 HPAQPAQP--SQDHHEEHRRRLEEHRRREEEHH 726
>Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical
protein C33B4.3b protein.
Length = 993
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Frame = +3
Query: 162 HQAFPSPADRPPVIPTTVSARDRPPPVSQPLHLNPSWI---FTRSACGNWPVRP 314
H + P A P I S+ PPP P H P+ + FT + + P P
Sbjct: 744 HPSLPRSASTPQPIQQQQSSIPPPPPPPPPPHCEPTMVHVEFTPPSTSSVPPPP 797
>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
protein C33B4.3a protein.
Length = 1110
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Frame = +3
Query: 162 HQAFPSPADRPPVIPTTVSARDRPPPVSQPLHLNPSWI---FTRSACGNWPVRP 314
H + P A P I S+ PPP P H P+ + FT + + P P
Sbjct: 744 HPSLPRSASTPQPIQQQQSSIPPPPPPPPPPHCEPTMVHVEFTPPSTSSVPPPP 797
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 27.1 bits (57), Expect = 9.1
Identities = 22/79 (27%), Positives = 28/79 (35%)
Frame = +3
Query: 12 PSVPPAPLFARPNHHDHRFRMEQLVSEQFRHHGLNLXXXXXXXXXNSLPPHQAFPSPADR 191
P PP P P+H H + L +Q R+H P +P P
Sbjct: 760 PGAPP-PAGFHPSHPQHPQHAQYLAWQQQRYHQQQQHQQQQQQGAPG-GPRPPYPYPGG- 816
Query: 192 PPVIPTTVSARDRPPPVSQ 248
PV P R PPP +Q
Sbjct: 817 -PVPPGPPQNRMPPPPPAQ 834
>U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 1 protein.
Length = 2500
Score = 27.1 bits (57), Expect = 9.1
Identities = 24/88 (27%), Positives = 33/88 (37%), Gaps = 5/88 (5%)
Frame = +3
Query: 24 PAPLFA--RPNHHDHRFRMEQLV-SEQFRHHGLNLXXXXXXXXXNSLPPHQAFPSPADRP 194
P P+F H H+ M Q S Q G+NL + PA P
Sbjct: 744 PQPMFPPQAQAQHQHQHMMGQPPPSSQNAQPGMNLLMNMSPFASGNNRDLLKVVQPAPPP 803
Query: 195 P--VIPTTVSARDRPPPVSQPLHLNPSW 272
P + P+T R PP++Q + N W
Sbjct: 804 PSSMSPSTQMMRSLIPPLTQRQNSNSGW 831
>AC092690-3|AAK73857.1| 1145|Caenorhabditis elegans Hypothetical
protein BE0003N10.3 protein.
Length = 1145
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 395 RVGQTPPVGAGPGTVDTPREAIKPHSSTSPERRIE 499
R G+ PVG G P E +P + PE+ +E
Sbjct: 596 RAGEEVPVGEPGGAPGAPGEPGEPEEALEPEKLLE 630
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,503,176
Number of Sequences: 27780
Number of extensions: 223427
Number of successful extensions: 1152
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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