Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1002.Seq
         (566 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q16GU6 Cluster: Putative uncharacterized protein; n=2; ...    33   4.7  
UniRef50_Q5N796 Cluster: Transcription initiation factor IID (TF...    32   8.1  

>UniRef50_Q16GU6 Cluster: Putative uncharacterized protein; n=2; Aedes
            aegypti|Rep: Putative uncharacterized protein - Aedes
            aegypti (Yellowfever mosquito)
          Length = 1885

 Score = 33.1 bits (72), Expect = 4.7
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = -3

Query: 435  PVQPNQANTEQKSYXAIHPLQXRISVKVFQTGSEHPHVNVNREAKHYRNYK 283
            PVQ     T +K Y A+HP + R++ K    G E  ++N++    HY+ +K
Sbjct: 1067 PVQVTDTGTLRKHYKAVHP-EERVTFKC--PGCERFYLNLSSFKDHYKKHK 1114


>UniRef50_Q5N796 Cluster: Transcription initiation factor IID
           (TFIID) subunit A-like protein; n=3; Oryza sativa|Rep:
           Transcription initiation factor IID (TFIID) subunit
           A-like protein - Oryza sativa subsp. japonica (Rice)
          Length = 542

 Score = 32.3 bits (70), Expect = 8.1
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
 Frame = -3

Query: 456 VESSKSAPVQPNQANTEQKSYXAIHPLQXRISV---KVFQTGSEHPHVN 319
           ++SS  +PV P Q   +Q+    IH LQ +  +   ++ QT  +HPH+N
Sbjct: 291 MQSSLGSPVSPQQFQHQQRMLL-IHQLQQQSGLNQHQIAQTQQQHPHLN 338


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 434,049,190
Number of Sequences: 1657284
Number of extensions: 6552793
Number of successful extensions: 13718
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13669
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 38321472724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)