Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1002.Seq
         (566 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    27   1.9  
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    26   4.4  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    25   5.9  
SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomy...    25   7.7  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    25   7.7  

>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 252  GHWIGTANQCXYNF 293
            G W+GT+ QC +NF
Sbjct: 1539 GEWLGTSPQCIFNF 1552


>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -3

Query: 132 YIPSQKQVFMRLLMHNPQTQVQ*NENGXQ*VKFNTKIYFEKAAA 1
           Y PS  ++F    +H+ +T V+   NG   + +N K    K AA
Sbjct: 331 YFPSLSKLFRYYGLHSTRTYVEQFSNGVTIISYNFKPELFKNAA 374


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 331 MFRSGLKYFYTDSXLQRMYCXITFLFSVCLIWLNRSR 441
           + +S ++ F+T    QR    I  L SV + WL R R
Sbjct: 758 LLQSAIRGFFTRKEYQRTVKFIIKLQSVIMGWLTRQR 794


>SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -1

Query: 407 NKKVXKQYILCNXESV*KYFRPDRNILM*MLTERPNITEI 288
           N  V  + +    ES+  Y R  RNI+M +   R N T I
Sbjct: 129 NPLVFLELLKSELESIFVYVREQRNIIMEIFANRFNSTHI 168


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 85   IMHKQTHEHLFLAWYVLFLNYHPNSI 162
            +MH Q   H    WY++F   HPN+I
Sbjct: 1046 VMHMQ---HALKLWYLVFGPDHPNTI 1068


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,873,479
Number of Sequences: 5004
Number of extensions: 30345
Number of successful extensions: 63
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)