Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1002.Seq
         (566 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1332 - 36379736-36379909,36380395-36380459,36380534-363806...    32   0.28 
03_04_0091 + 17241555-17241602,17241685-17241822,17241901-172421...    28   6.0  

>01_06_1332 -
           36379736-36379909,36380395-36380459,36380534-36380612,
           36380794-36380868,36381106-36381609,36382046-36382246,
           36383033-36383566
          Length = 543

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
 Frame = -3

Query: 456 VESSKSAPVQPNQANTEQKSYXAIHPLQXRISV---KVFQTGSEHPHVN 319
           ++SS  +PV P Q   +Q+    IH LQ +  +   ++ QT  +HPH+N
Sbjct: 292 MQSSLGSPVSPQQFQHQQRMLL-IHQLQQQSGLNQHQIAQTQQQHPHLN 339


>03_04_0091 +
           17241555-17241602,17241685-17241822,17241901-17242198,
           17242281-17242513,17242632-17242827,17242911-17243032,
           17243100-17243165,17243373-17243436,17243851-17244176
          Length = 496

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -3

Query: 447 SKSAPVQPNQANTEQKSYXAIHPLQXRISVKVFQTGSEHPHVNVNREAKH 298
           S +AP  P Q +  +KSY +I      + VKV +  S  P V      KH
Sbjct: 219 SVAAPPPPAQKDVTKKSYASITLTMIALQVKVMKEVSLTPVVKPKPAPKH 268


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,250,528
Number of Sequences: 37544
Number of extensions: 169015
Number of successful extensions: 328
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)