Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1002.Seq
         (566 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36159| Best HMM Match : Peptidase_M28 (HMM E-Value=0)               28   6.1  
SB_27982| Best HMM Match : Cu2_monooxygen (HMM E-Value=2.9e-07)        28   6.1  

>SB_36159| Best HMM Match : Peptidase_M28 (HMM E-Value=0)
          Length = 771

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -3

Query: 354 VFQTGSEHPH-VNVNREAKHYRNYKXIGSQFLSNGL 250
           VFQTG EHP  +    E   Y + + +G +   +GL
Sbjct: 367 VFQTGPEHPWLIKTYTEVAPYPSAQVLGQEIFQSGL 402


>SB_27982| Best HMM Match : Cu2_monooxygen (HMM E-Value=2.9e-07)
          Length = 245

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +1

Query: 238 EHKXKAIG*ELRTNVFIISVMFGLSVNIHMRMFRSGLKYFYTDS 369
           +H    +G + +   F++ V +     +  ++  SG+++FYTDS
Sbjct: 161 DHVGSPLGLDFQGRYFVMEVHYNNPDKLAGKIDNSGVRFFYTDS 204


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,693,760
Number of Sequences: 59808
Number of extensions: 209694
Number of successful extensions: 325
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)