Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1001.Seq
         (565 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22380| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_19000| Best HMM Match : Ery_res_leader2 (HMM E-Value=0.69)          28   6.1  
SB_35683| Best HMM Match : Amino_oxidase (HMM E-Value=0.0092)          27   8.0  
SB_3797| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.0  

>SB_22380| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 862

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = +1

Query: 454 DSFKGLLLSCNIFNINHLSTFIFLPV 531
           +SFKG+ L+ N +N+N L  F+ LPV
Sbjct: 534 ESFKGVALAVNAWNVNELFDFL-LPV 558


>SB_19000| Best HMM Match : Ery_res_leader2 (HMM E-Value=0.69)
          Length = 310

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +1

Query: 418 PTIISKLTNFTGDSFKGLLLSCNIFNINHLSTFIFLPVNCLLK*DQIMY 564
           P I++ LT F  +++  +  SC IF    +  F  LP+    + D+ +Y
Sbjct: 125 PAILT-LTAFVSNAYNNVTNSCRIFVEEQIKAFAILPLEQYYRSDKPIY 172


>SB_35683| Best HMM Match : Amino_oxidase (HMM E-Value=0.0092)
          Length = 729

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 354 YQILISSTVFLPSLRSSFRIKTYYNLKTY 440
           Y  L + TVF+   R S   +TY NLK Y
Sbjct: 587 YDRLANITVFVQGSRKSHETQTYANLKDY 615


>SB_3797| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 346

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 285 HTSMIKSRYRPFIEIKKKNPHL 350
           H   +K  +RPF+E+    PHL
Sbjct: 206 HKVTVKGMFRPFVEVNVVGPHL 227


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,035,003
Number of Sequences: 59808
Number of extensions: 195480
Number of successful extensions: 413
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)