Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1001.Seq
         (565 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            24   3.9  
AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic acetylch...    24   3.9  

>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = +3

Query: 237  TKRSYKIFR*VT*INVHTSMIKSRYRPFIEIKKKNPHLIYQILISSTVFLPSLRSSFRIK 416
            T +SYK+   +  I  H    +++ +   E +K NP+L +    + T F   + + FR  
Sbjct: 3026 TSKSYKVTNWINEIFEHFFNTENQGKQDQEDRKVNPYLKHHKRPTKTPF--HIANCFRTN 3083

Query: 417  TYYNLKT 437
            +  NL T
Sbjct: 3084 SADNLNT 3090


>AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 5 protein.
          Length = 533

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = +2

Query: 53  NFKH*KI*HLFKWKSIRRLKTIKSKYCKKPLNP*RLLIDL--SPEIIERETI 202
           NF+  K   ++KW  +  L    S  C    N  RLL DL  S  I+ER  +
Sbjct: 7   NFQCYKQLRIYKWIIVLMLIANSSILCMAGYNEKRLLHDLLDSYNILERPVV 58


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 427,456
Number of Sequences: 2352
Number of extensions: 7001
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 52983882
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)