Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0999.Seq
         (565 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   5.5  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    21   5.5  
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    21   5.5  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   7.3  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    21   7.3  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 411 VNY*PLFNAGFEPYSL 458
           +NY P  + GF PY +
Sbjct: 330 LNYVPHISTGFSPYEI 345


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 86  FLIIIINLMKVYEINKFKKHNLHFCLII 169
           FL+I  + +K+Y   K++K    FC I+
Sbjct: 18  FLLICDSYLKIYHKEKYRK----FCRIL 41


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 80  IYFLIIIINLMKVYEINK 133
           +Y L IIIN + +YE  K
Sbjct: 137 VYLLPIIINPLVLYEARK 154


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 217 YNHHSIYSSKYI 182
           YNH + Y SKY+
Sbjct: 167 YNHTANYDSKYL 178


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 160 FDNLLKCEYICLSKLSDDCISSFYGLQ 240
           + N+  C Y  L  LS+D   +FY ++
Sbjct: 109 YSNVTTCSYYSLDDLSED---TFYDIR 132


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,815
Number of Sequences: 336
Number of extensions: 2389
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13890653
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)