Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0999.Seq
         (565 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3...    28   0.82 
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po...    26   4.4  
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    25   7.7  

>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 449

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 12/15 (80%), Positives = 12/15 (80%)
 Frame = +2

Query: 113 KVYEINKFKKHNLHF 157
           KV EINK KK NLHF
Sbjct: 4   KVEEINKLKKKNLHF 18


>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 206 LNLLKQIYSHFNKLSNKNVNY 144
           +NL+K+ Y+H +KL  K+  Y
Sbjct: 38  INLIKEAYNHVHKLIQKDERY 58


>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 360 IQIRFS*FTNNYPKVRLPALIIVDSIELHFLIL 262
           + I+ S   N  PK+ L AL+ +DSI    L+L
Sbjct: 238 VSIQRSNVANELPKISLQALLEIDSIVSGVLML 270


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,104,128
Number of Sequences: 5004
Number of extensions: 39400
Number of successful extensions: 82
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)