Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0999.Seq
         (565 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31801| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_7902| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.1  

>SB_31801| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1018

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = -3

Query: 86  NKFKNFLITNNILHSTT 36
           N+FK FL +N+ILH+TT
Sbjct: 867 NEFKKFLRSNDILHTTT 883


>SB_7902| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1020

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -1

Query: 415 LTCYLSKMSFRRVLNCQWNTNSFFMI 338
           +T  L+  S +R+L+C  NTN +FM+
Sbjct: 719 ITPVLTASSLQRLLHCAGNTNEWFML 744


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,059,500
Number of Sequences: 59808
Number of extensions: 229124
Number of successful extensions: 336
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)