Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0999.Seq
         (565 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70781-3|CAA94833.2|  352|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z30317-3|CAA82969.1|  930|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z81493-8|CAB04043.1|  305|Caenorhabditis elegans Hypothetical pr...    29   2.3  

>Z70781-3|CAA94833.2|  352|Caenorhabditis elegans Hypothetical
           protein F57A8.5 protein.
          Length = 352

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 6/29 (20%)
 Frame = -1

Query: 415 LTCYLSKMSFRR------VLNCQWNTNSF 347
           L+CY  KM FRR      V NC+W+ N F
Sbjct: 33  LSCYACKMFFRRMSVQKLVYNCKWSNNCF 61


>Z30317-3|CAA82969.1|  930|Caenorhabditis elegans Hypothetical
           protein T16G12.6 protein.
          Length = 930

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/33 (36%), Positives = 23/33 (69%)
 Frame = +2

Query: 218 FLVSMVYSX*FLNETKIRKCSSIESTIIKAGNL 316
           F+VS++ S  F+ E+ I  C+  +ST+++ G+L
Sbjct: 710 FIVSLLNSSLFVTESVIAACALAKSTVLQCGSL 742


>Z81493-8|CAB04043.1|  305|Caenorhabditis elegans Hypothetical
           protein F01D5.8 protein.
          Length = 305

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 214 NHHSIYSSKYIHILT 170
           NHH+I S KYIH+ T
Sbjct: 255 NHHTILSGKYIHVFT 269


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,214,177
Number of Sequences: 27780
Number of extensions: 203478
Number of successful extensions: 335
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)