Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0999.Seq
         (565 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   3.7  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    22   4.9  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    22   4.9  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    22   4.9  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    22   4.9  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   4.9  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              21   8.6  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 175 KCEYICLSKLSDDCISSFYGL 237
           KC  +   K+SD+ IS+ Y L
Sbjct: 123 KCIIVMPEKMSDEKISTLYAL 143


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = -1

Query: 244 STVNHRN*KYNHHSIYSSKYIHILTNY 164
           +T+++ N KYN+++   +K ++   NY
Sbjct: 88  NTIHNNNYKYNYNNNNYNKKLYYNINY 114


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = -1

Query: 244 STVNHRN*KYNHHSIYSSKYIHILTNY 164
           +T+++ N KYN+++   +K ++   NY
Sbjct: 88  NTIHNNNYKYNYNNNNYNKKLYYNINY 114


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = -1

Query: 244 STVNHRN*KYNHHSIYSSKYIHILTNY 164
           +T+++ N KYN+++   +K ++   NY
Sbjct: 88  NTIHNNNYKYNYNNNNYNKKLYYNINY 114


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = -1

Query: 244 STVNHRN*KYNHHSIYSSKYIHILTNY 164
           +T+++ N KYN+++   +K ++   NY
Sbjct: 88  NTIHNNNYKYNYNNNNYNKKLYYNINY 114


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = -1

Query: 502 IDMSIQIDLNIIVSFKEYG 446
           +D+++ +DL+I  + +EYG
Sbjct: 676 VDVTLPLDLHIQNAIREYG 694


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 534 GNLCIXDKKMLLICQ 490
           GN+ + DKK+ L C+
Sbjct: 50  GNIDVEDKKVQLYCE 64


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,372
Number of Sequences: 438
Number of extensions: 2723
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)