Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0999.Seq
         (565 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g43920.1 68416.m04701 ribonuclease III family protein similar...    28   3.7  

>At3g43920.1 68416.m04701 ribonuclease III family protein similar to
           RNA helicase/RNAseIII CAF protein [Arabidopsis thaliana]
           GI:6102610; contains Pfam profiles PF02170: PAZ domain,
           PF00636: RNase3 domain
          Length = 1531

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = -3

Query: 416 VNLLFI*DVVPKSFELPMEYKFVFHDLP 333
           VNLLFI DVV + F++P     V  DLP
Sbjct: 422 VNLLFITDVVEEGFQVPDCSCMVCFDLP 449


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,073,819
Number of Sequences: 28952
Number of extensions: 171355
Number of successful extensions: 249
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)