Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0997.Seq
         (558 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26510.1 68415.m03181 xanthine/uracil permease family protein...    27   6.4  
At1g02890.1 68414.m00256 AAA-type ATPase family protein contains...    27   6.4  
At5g21900.1 68418.m02539 expressed protein                             27   8.5  

>At2g26510.1 68415.m03181 xanthine/uracil permease family protein
           contains Pfam profile: PF00860 permease family
          Length = 551

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -1

Query: 228 FHALNTHKNMYVLGESLFLS 169
           F   N+ +NMYV+G SLFLS
Sbjct: 434 FTDTNSMRNMYVIGVSLFLS 453


>At1g02890.1 68414.m00256 AAA-type ATPase family protein contains Pfam
            domain, PF00004: ATPase, AAA family; similar to
            mitochondrial sorting protein 1 (MSP1) (TAT-binding
            homolog 4) (Swiss-Prot:P28737) [Saccharomyces cerevisiae]
          Length = 1252

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
 Frame = +2

Query: 296  KKEKHVL-TPTLAX*DIHNQTNSPP---NKFKIALMQKCPAQCSGSSFKAVIMTWDNMQE 463
            KKE+ V      A   +++ T+  P   N FK A  Q C +  S SS    +  W+ +  
Sbjct: 1179 KKERSVAQAENRAMPQLYSSTDVRPLNMNDFKTAHDQVCASVASDSSNMNELQQWNELYG 1238

Query: 464  KIGEYNKIIL*YFI 505
            + G   K  L YF+
Sbjct: 1239 EGGSRKKTSLSYFM 1252


>At5g21900.1 68418.m02539 expressed protein
          Length = 544

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 393 CIKAILNLFGGEFV*LCISXNAKVGVSTCFS 301
           CI A L + GG    LC++    VG  T FS
Sbjct: 430 CIAAFLEVSGGSLRELCLNKVRDVGPETAFS 460


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,181,403
Number of Sequences: 28952
Number of extensions: 185058
Number of successful extensions: 279
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)